Dongchen He

According to our database, Dongchen He authored at least 6 papers between 2022 and 2026.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2026

DS-ProGen: A Dual-Structure Deep Language Model for Functional Protein Design.

Yanting Li, Zikang Wang, Jiyue Jiang, Ziqian Lin, Dongchen He, Yuheng Shan, Yanruisheng Shao, Jiayi Li, Xiangyu Shi, Jiuming Wang, Yanyu Chen, Yimin Fan, Han Li, Yu Li

Proceedings of the Fortieth AAAI Conference on Artificial Intelligence, 2026

RMSAGen: Integrating Multiple Sequence Alignment for Function RNA Design.

Jiyue Jiang, Yanyu Chen, Qingchuan Zhang, Jiayi Li, Xiangyu Shi, Chang Zhou, Ziqian Lin, Jiuming Wang, Dongchen He, Liang Hong, Qintong Li, Pengan Chen, Jiayang Chen, Xinrui Zhang, Jiao Yuan, Tianqing Zhang, Yu Li

Proceedings of the Fortieth AAAI Conference on Artificial Intelligence, 2026

2025

Benchmarking Large Language Models on Multiple Tasks in Bioinformatics NLP with Prompting.

Jiyue Jiang, Pengan Chen, Jiuming Wang, Dongchen He, Ziqin Wei, Liang Hong, Licheng Zong, Sheng Wang, Qinze Yu, Zixian Ma, Yanyu Chen, Yimin Fan, Xiangyu Shi, Jiawei Sun, Chuan Wu, Yu Li

CoRR, March, 2025

2024

Deep generative design of RNA aptamers using structural predictions.

Felix Wong, Dongchen He, Aarti Krishnan, Liang Hong, Alexander Z. Wang, Jiuming Wang, Zhihang Hu, Satotaka Omori, Alicia Li, Jiahua Rao, Qinze Yu, Wengong Jin, Tianqing Zhang, Katherine Ilia, Jack X. Chen, Shuangjia Zheng, Irwin King, Yu Li, James J. Collins

Nat. Comput. Sci., November, 2024

RiboDiffusion: tertiary structure-based RNA inverse folding with generative diffusion models.

Han Huang, Ziqian Lin, Dongchen He, Liang Hong, Yu Li

Bioinform., 2024

2022

View Dialogue in 2D: A Two-stream Model in Time-speaker Perspective for Dialogue Summarization and beyond.

Keli Xie, Dongchen He, Jiaxin Zhuang, Siyuan Lu, Zhongfeng Wang

Proceedings of the 29th International Conference on Computational Linguistics, 2022