Janez Konc

According to our database, Janez Konc authored at least 31 papers between 2007 and 2022.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2022

ProBiS-Dock: A Hybrid Multitemplate Homology Flexible Docking Algorithm Enabled by Protein Binding Site Comparison.

Janez Konc, Samo Lesnik, Blaz Skrlj, Matej Sova, Matic Proj, Damijan Knez, Stanislav Gobec, Dusanka Janezic

J. Chem. Inf. Model., 2022

ProBiS-Fold Approach for Annotation of Human Structures from the AlphaFold Database with No Corresponding Structure in the PDB to Discover New Druggable Binding Sites.

Janez Konc, Dusanka Janezic

J. Chem. Inf. Model., 2022

Deep node ranking for neuro-symbolic structural node embedding and classification.

Blaz Skrlj, Jan Kralj, Janez Konc, Marko Robnik-Sikonja, Nada Lavrac

Int. J. Intell. Syst., 2022

2021

ProBiS-Dock Database: A Web Server and Interactive Web Repository of Small Ligand-Protein Binding Sites for Drug Design.

Janez Konc, Samo Lesnik, Blaz Skrlj, Dusanka Janezic

J. Chem. Inf. Model., 2021

CaNDis: a web server for investigation of causal relationships between diseases, drugs and drug targets.

Blaz Skrlj, Nika Erzen, Nada Lavrac, Tanja Kunej, Janez Konc

Bioinform., 2021

2020

Loop Grafting between Similar Local Environments for Fc-Silent Antibodies.

Samo Lesnik, Milan Hodoscek, Barbara Podobnik, Janez Konc

J. Chem. Inf. Model., 2020

CANDOCK: Chemical Atomic Network-Based Hierarchical Flexible Docking Algorithm Using Generalized Statistical Potentials.

Jonathan Fine, Janez Konc, Ram Samudrala, Gaurav Chopra

J. Chem. Inf. Model., 2020

2019

Discovery of Novel Potential Human Targets of Resveratrol by Inverse Molecular Docking.

Katarina Kores, Samo Lesnik, Urban Bren, Dusanka Janezic, Janez Konc

J. Chem. Inf. Model., 2019

Deep Node Ranking: an Algorithm for Structural Network Embedding and End-to-End Classification.

Blaz Skrlj, Jan Kralj, Janez Konc, Marko Robnik-Sikonja, Nada Lavrac

CoRR, 2019

2017

Identification of Conserved Water Sites in Protein Structures for Drug Design.

Marko Jukic, Janez Konc, Stanislav Gobec, Dusanka Janezic

J. Chem. Inf. Model., December, 2017

GenProBiS: web server for mapping of sequence variants to protein binding sites.

Janez Konc, Blaz Skrlj, Nika Erzen, Tanja Kunej, Dusanka Janezic

Nucleic Acids Res., 2017

BoBER: web interface to the base of bioisosterically exchangeable replacements.

Samo Lesnik, Blaz Skrlj, Nika Erzen, Urban Bren, Stanislav Gobec, Janez Konc, Dusanka Janezic

J. Cheminformatics, 2017

2016

Ligand-based virtual screening interface between PyMOL and LiSiCA.

Athira Dilip, Samo Lesnik, Tanja Stular, Dusanka Janezic, Janez Konc

J. Cheminformatics, 2016

2015

LiSiCA: A Software for Ligand-Based Virtual Screening and Its Application for the Discovery of Butyrylcholinesterase Inhibitors.

Samo Lesnik, Tanja Stular, Boris Brus, Damijan Knez, Stanislav Gobec, Dusanka Janezic, Janez Konc

J. Chem. Inf. Model., 2015

ProBiS-CHARMMing: Web Interface for Prediction and Optimization of Ligands in Protein Binding Sites.

Janez Konc, Benjamin T. Miller, Tanja Stular, Samo Lesnik, H. Lee Woodcock III, Bernard R. Brooks, Dusanka Janezic

J. Chem. Inf. Model., 2015

Modeling enzyme-ligand binding in drug discovery.

Janez Konc, Samo Lesnik, Dusanka Janezic

J. Cheminformatics, 2015

Molecular dynamics to enhance structure-based virtual screening on cathepsin B.

Mitja Ogrizek, Samo Turk, Samo Lesnik, Izidor Sosic, Milan Hodoscek, Bojana Mirkovic, Janko Kos, Dusanka Janezic, Stanislav Gobec, Janez Konc

J. Comput. Aided Mol. Des., 2015

2014

ProBiS-ligands: a web server for prediction of ligands by examination of protein binding sites.

Janez Konc, Dusanka Janezic

Nucleic Acids Res., 2014

2013

Structure-Based Function Prediction of Uncharacterized Protein Using Binding Sites Comparison.

Janez Konc, Milan Hodoscek, Mitja Ogrizek, Joanna Trykowska Konc, Dusanka Janezic

PLoS Comput. Biol., 2013

Structurally Conserved Binding Sites of Hemagglutinin as Targets for Influenza Drug and Vaccine Development.

Muhammad Yusuf, Janez Konc, Sy Bing Choi, Joanna Trykowska Konc, Nurul Bahiyah Ahmad Khairudin, Dusanka Janezic, Habibah A. Wahab

J. Chem. Inf. Model., 2013

Exact Parallel Maximum Clique Algorithm for General and Protein Graphs.

Matjaz Depolli, Janez Konc, Kati Rozman, Roman Trobec, Dusanka Janezic

J. Chem. Inf. Model., 2013

2012

ProBiS-2012: web server and web services for detection of structurally similar binding sites in proteins.

Janez Konc, Dusanka Janezic

Nucleic Acids Res., 2012

ProBiS-Database: Precalculated Binding Site Similarities and Local Pairwise Alignments of PDB Structures.

Janez Konc, Tomo Cesnik, Joanna Trykowska Konc, Matej Penca, Dusanka Janezic

J. Chem. Inf. Model., 2012

Correlating Protein Hot Spot Surface Analysis Using ProBiS with Simulated Free Energies of Protein-Protein Interfacial Residues.

Nejc Carl, Milan Hodoscek, Blaz Vehar, Janez Konc, Bernard R. Brooks, Dusanka Janezic

J. Chem. Inf. Model., 2012

Parallel-ProBiS: Fast parallel algorithm for local structural comparison of protein structures and binding sites.

Janez Konc, Matjaz Depolli, Roman Trobec, Kati Rozman, Dusanka Janezic

J. Comput. Chem., 2012

2010

ProBiS: a web server for detection of structurally similar protein binding sites.

Janez Konc, Dusanka Janezic

Nucleic Acids Res., 2010

Protein-Protein Binding Site Prediction by Local Structural Alignment.

Nejc Carl, Janez Konc, Blaz Vehar, Dusanka Janezic

J. Chem. Inf. Model., 2010

ProBiS algorithm for detection of structurally similar protein binding sites by local structural alignment.

Janez Konc, Dusanka Janezic

Bioinform., 2010

2008

Protein Surface Conservation in Binding Sites.

Nejc Carl, Janez Konc, Dusanka Janezic

J. Chem. Inf. Model., 2008

2007

Protein-Protein Binding-Sites Prediction by Protein Surface Structure Conservation.

Janez Konc, Dusanka Janezic

J. Chem. Inf. Model., 2007

A Branch and Bound Algorithm for Matching Protein Structures.

Janez Konc, Dusanka Janezic

Proceedings of the Adaptive and Natural Computing Algorithms, 8th International Conference, 2007