Urban Bren

According to our database, Urban Bren authored at least 15 papers between 2005 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of five.

2024

The Effect of Microwaves on Protein Structure: Molecular Dynamics Approach.

Matic Broz, Chris Oostenbrink, Urban Bren

J. Chem. Inf. Model., 2024

2023

Identifying Metal Binding Sites in Proteins Using Homologous Structures, the MADE Approach.

Vid Ravnik, Marko Jukic, Urban Bren

J. Chem. Inf. Model., August, 2023

Fentanyl and the Fluorinated Fentanyl Derivative NFEPP Elicit Distinct Hydrogen-Bond Dynamics of the Opioid Receptor.

Samo Lesnik, Urban Bren, Tatiana Domratcheva, Ana-Nicoleta Bondar

J. Chem. Inf. Model., August, 2023

2022

Conserved Water Networks Identification for Drug Design Using Density Clustering Approaches on Positional and Orientational Data.

Jelena Tosovic, Domagoj Fijan, Marko Jukic, Urban Bren

J. Chem. Inf. Model., 2022

2021

CHARMM Force-Field Parameters for Morphine, Heroin, and Oliceridine, and Conformational Dynamics of Opioid Drugs.

Thomas Giannos, Samo Lesnik, Urban Bren, Milan Hodoscek, Tatiana Domratcheva, Ana-Nicoleta Bondar

J. Chem. Inf. Model., 2021

Bioinformatic and MD Analysis of N501Y SARS-CoV-2 (UK) Variant.

Marko Jukic, Sebastjan Kralj, Natalia Nikitina, Urban Bren

Proceedings of the Computer Science Protecting Human Society Against Epidemics, 2021

2020

Potential Energy Function for Fentanyl-Based Opioid Pain Killers.

Samo Lesnik, Milan Hodoscek, Urban Bren, Christoph Stein, Ana-Nicoleta Bondar

J. Chem. Inf. Model., 2020

2019

Discovery of Novel Potential Human Targets of Resveratrol by Inverse Molecular Docking.

Katarina Kores, Samo Lesnik, Urban Bren, Dusanka Janezic, Janez Konc

J. Chem. Inf. Model., 2019

2017

BoBER: web interface to the base of bioisosterically exchangeable replacements.

Samo Lesnik, Blaz Skrlj, Nika Erzen, Urban Bren, Stanislav Gobec, Janez Konc, Dusanka Janezic

J. Cheminformatics, 2017

2015

Carcinogenesis induced by Aflatoxin B1: A computational study.

Tibor Kuna, Urban Bren

Proceedings of the 15th IEEE International Conference on Bioinformatics and Bioengineering, 2015

2014

Pyranose Dehydrogenase Ligand Promiscuity: A Generalized Approach to Simulate Monosaccharide Solvation, Binding, and Product Formation.

Michael M. H. Graf, Zhixiong Lin, Urban Bren, Dietmar Haltrich, Wilfred F. van Gunsteren, Chris Oostenbrink

PLoS Comput. Biol., 2014

2013

Molecular dynamics simulations give insight into d-glucose dioxidation at C2 and C3 by Agaricus meleagris pyranose dehydrogenase.

Michael M. H. Graf, Urban Bren, Dietmar Haltrich, Chris Oostenbrink

J. Comput. Aided Mol. Des., 2013

2012

Cytochrome P450 3A4 Inhibition by Ketoconazole: Tackling the Problem of Ligand Cooperativity Using Molecular Dynamics Simulations and Free-Energy Calculations.

Urban Bren, Chris Oostenbrink

J. Chem. Inf. Model., 2012

2009

Dynamic Behavior of Avian Influenza A Virus Neuraminidase Subtype H5N1 in Complex with Oseltamivir, Zanamivir, Peramivir, and Their Phosphonate Analogues.

Thanyarat Udommaneethanakit, Thanyada Rungrotmongkol, Urban Bren, Vladimir Frecer, Stanislav Miertus

J. Chem. Inf. Model., 2009

2005

Development and Validation of Empirical Force Field Parameters for Netropsin.

Urban Bren, Milan Hodoscek, Joze Koller

J. Chem. Inf. Model., 2005