Jason C. Cole

Orcid: 0000-0002-0291-6317

According to our database1, Jason C. Cole authored at least 26 papers between 1997 and 2023.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

Legend:

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PhD thesis 
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Online presence:

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Bibliography

2023
Applying atomistic neural networks to bias conformer ensembles towards bioactive-like conformations.
J. Cheminformatics, December, 2023

Augmented Reality for Enhanced Visualization of MOF Adsorbents.
J. Chem. Inf. Model., October, 2023

2022
Fragment Hotspot Mapping to Identify Selectivity-Determining Regions between Related Proteins.
J. Chem. Inf. Model., 2022

A high quality, industrial data set for binding affinity prediction: performance comparison in different early drug discovery scenarios.
J. Comput. Aided Mol. Des., 2022

2021
Validation of a Field-Based Ligand Screener Using a Novel Benchmarking Data Set for Assessing 3D-Based Virtual Screening Methods.
J. Chem. Inf. Model., 2021

2020
Identification of Noncompetitive Protein-Ligand Interactions for Structural Optimization.
J. Chem. Inf. Model., 2020

Hotspots API: A Python Package for the Detection of Small Molecule Binding Hotspots and Application to Structure-Based Drug Design.
J. Chem. Inf. Model., 2020

2018
Knowledge-Based Conformer Generation Using the Cambridge Structural Database.
J. Chem. Inf. Model., 2018

2016
Knowledge-Based Optimization of Molecular Geometries Using Crystal Structures.
J. Chem. Inf. Model., 2016

2014
Knowledge-Based Libraries for Predicting the Geometric Preferences of Druglike Molecules.
J. Chem. Inf. Model., 2014

Kernel Density Estimation Applied to Bond Length, Bond Angle, and Torsion Angle Distributions.
J. Chem. Inf. Model., 2014

Assessment of a Cambridge Structural Database-Driven Overlay Program.
J. Chem. Inf. Model., 2014

Kernel density estimation of CSD distributions - an application to knowledge based molecular optimisation.
J. Cheminformatics, 2014

2013
How to pick a winning team: approaches towards the selection of computationally derived protein structures for ensemble-based virtual screening.
J. Cheminformatics, 2013

2012
Potential and Limitations of Ensemble Docking.
J. Chem. Inf. Model., 2012

Validating and Understanding Ring Conformations Using Small Molecule Crystallographic Data.
J. Chem. Inf. Model., 2012

The assessment of computationally derived protein ensembles in protein-ligand docking.
J. Cheminformatics, 2012

Development and validation of an improved algorithm for overlaying flexible molecules.
J. Comput. Aided Mol. Des., 2012

Pose prediction and virtual screening performance of GOLD scoring functions in a standardized test.
J. Comput. Aided Mol. Des., 2012

2011
The Ensemble Performance Index: An Improved Measure for Assessing Ensemble Pose Prediction Performance.
J. Chem. Inf. Model., 2011

2010
Ensemble docking revisited.
J. Cheminformatics, 2010

Ant Colony Optimisation for Ligand Docking.
Proceedings of the Swarm Intelligence - 7th International Conference, 2010

2009
Testing Assumptions and Hypotheses for Rescoring Success in Protein-Ligand Docking.
J. Chem. Inf. Model., 2009

Secbase: Database Module To Retrieve Secondary Structure Elements with Ligand Binding Motifs.
J. Chem. Inf. Model., 2009

2004
Retrieval of Crystallographically-Derived Molecular Geometry Information.
J. Chem. Inf. Model., 2004

1997
IsoStar: A library of information about nonbonded interactions.
J. Comput. Aided Mol. Des., 1997


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