Jean-Christophe Olivo-Marin
Orcid: 0000-0001-6796-0696Affiliations:
- Institut Pasteur, Paris, France
According to our database1,
Jean-Christophe Olivo-Marin
authored at least 131 papers
between 1993 and 2024.
Collaborative distances:
Collaborative distances:
Awards
IEEE Fellow
IEEE Fellow 2012, "For contributions to image analysis and its applications in biological imaging".
Timeline
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Online presence:
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on orcid.org
On csauthors.net:
Bibliography
2024
Scribble-based fast weak-supervision and interactive corrections for segmenting whole slide images.
CoRR, 2024
2023
From Nano to Macro: An overview of the IEEE Bio Image and Signal Processing Technical Committee.
IEEE Signal Process. Mag., June, 2023
Reformulating Optical Flow to Solve Image-Based Inverse Problems and Quantify Uncertainty.
IEEE Trans. Pattern Anal. Mach. Intell., May, 2023
IEEE Trans. Medical Imaging, 2023
Proceedings of the 20th IEEE International Symposium on Biomedical Imaging, 2023
Cross-Modal Contrastive Learning for Robust Representation of the Extracellular Matrix in Static and Dynamic Full-Field OCT Images.
Proceedings of the 20th IEEE International Symposium on Biomedical Imaging, 2023
Proceedings of the 20th IEEE International Symposium on Biomedical Imaging, 2023
Proceedings of the 20th IEEE International Symposium on Biomedical Imaging, 2023
Proceedings of the 20th IEEE International Symposium on Biomedical Imaging, 2023
2022
Proceedings of the 19th IEEE International Symposium on Biomedical Imaging, 2022
Proceedings of the 19th IEEE International Symposium on Biomedical Imaging, 2022
Proceedings of the 19th IEEE International Symposium on Biomedical Imaging, 2022
Proceedings of the 19th IEEE International Symposium on Biomedical Imaging, 2022
Proceedings of the 26th International Conference on Pattern Recognition, 2022
The Lifecycle of a Neural Network in the Wild: A Multiple Instance Learning Study on Cancer Detection from Breast Biopsies Imaged with Novel Technique.
Proceedings of the 2022 IEEE International Conference on Image Processing, 2022
Proceedings of the 2022 IEEE International Conference on Image Processing, 2022
Proceedings of the 2022 IEEE International Conference on Image Processing, 2022
2021
IEEE Trans. Image Process., 2021
Nu3D: 3D Nuclei Segmentation from Light-Sheet Microscopy Images of the Embryonic Heart.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021
A Min-Max Based Hyperparameter Estimation For Domain-Adapted Segmentation Of Amoeboid Cells.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021
Blind Source Separation In Dynamic Cell Imaging Using Non-Negative Matrix Factorization Applied To Breast Cancer Biopsies.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021
Leveraging Global Diagnosis For Tumor Localization In Dynamic Cell Imaging Of Breast Cancer Tissue Towards Fast Biopsying.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021
A Robust and Versatile Framework to Compare Spike Detection Methods in Calcium Imaging of Neuronal Activity.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021
Morphological Reconstruction of Detached Dendritic Spines via Geodesic Path Prediction.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021
2020
IEEE Signal Process. Lett., 2020
Learning to segment clustered amoeboid cells from brightfield microscopy via multi-task learning with adaptive weight selection.
Proceedings of the 25th International Conference on Pattern Recognition, 2020
Proceedings of the 25th International Conference on Pattern Recognition, 2020
Proceedings of the IEEE International Conference on Image Processing, 2020
2019
Proceedings of the 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2019
Proceedings of the Digital Pathology - 15th European Congress, 2019
Vector-Based Morphological Operations on Polygons Using Straight Skeletons for Digital Pathology.
Proceedings of the Discrete Geometry for Computer Imagery, 2019
2018
Denoising of Microscopy Images: A Review of the State-of-the-Art, and a New Sparsity-Based Method.
IEEE Trans. Image Process., 2018
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018
Basal cell carcinoma detection in full field OCT images using convolutional neural networks.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018
Unsupervised analysis of mouse social behaviour reveals how hyperactivity impacts social aspects in a mouse model of autism.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018
2017
Proceedings of the 14th IEEE International Symposium on Biomedical Imaging, 2017
Reducing data acquisition for fast Structured Illumination Microscopy using Compressed Sensing.
Proceedings of the 14th IEEE International Symposium on Biomedical Imaging, 2017
Combining global tracking with statistical classification to analyze endocytosis dynamics using TIRF microscopy.
Proceedings of the 14th IEEE International Symposium on Biomedical Imaging, 2017
Proceedings of the 14th IEEE International Symposium on Biomedical Imaging, 2017
Proceedings of the 14th IEEE International Symposium on Biomedical Imaging, 2017
2016
A Guided Tour of Selected Image Processing and Analysis Methods for Fluorescence and Electron Microscopy.
IEEE J. Sel. Top. Signal Process., 2016
Introduction to the Issue on Advanced Signal Processing in Microscopy and Cell Imaging.
IEEE J. Sel. Top. Signal Process., 2016
Biophysical measurements in 2D and 3D live cell imaging using fluid dynamics and optical flow.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016
Sparsity-based simplification of spectral-domain optical coherence tomography images of cardiac samples.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016
2015
Signal Processing Challenges in Quantitative 3-D Cell Morphology: More than meets the eye.
IEEE Signal Process. Mag., 2015
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015
Using steerable wavelets and minimal paths to reconstruct automatically filaments in fluorescence imaging.
Proceedings of the 2015 IEEE International Conference on Image Processing, 2015
2014
An Unbiased Risk Estimator for Image Denoising in the Presence of Mixed Poisson-Gaussian Noise.
IEEE Trans. Image Process., 2014
A statistical analysis of spatial clustering along cell filaments using Ripley's K function.
Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014
3D shape analysis using overcomplete spherical wavelets: Application to BLEB detection in cell biology.
Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014
Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014
2013
IEEE Trans. Pattern Anal. Mach. Intell., 2013
Extracting 3D cell parameters from dense tissue environments: application to the development of the mouse heart.
Bioinform., 2013
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013
Phase retrieval with sparsity priors and application to microscopy video reconstruction.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013
Proceedings of the IEEE International Conference on Image Processing, 2013
Proceedings of the 21st European Signal Processing Conference, 2013
2012
IEEE Trans. Image Process., 2012
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012
Video reconstruction using compressed sensing measurements and 3d total variation regularization for bio-imaging applications.
Proceedings of the 19th IEEE International Conference on Image Processing, 2012
Proceedings of the 19th IEEE International Conference on Image Processing, 2012
2011
3-D Active Meshes: Fast Discrete Deformable Models for Cell Tracking in 3-D Time-Lapse Microscopy.
IEEE Trans. Image Process., 2011
IEEE Signal Process. Mag., 2011
Comput. Medical Imaging Graph., 2011
A fast and automated framework for extraction of nuclei from cluttered 3D images in fluorescence microscopy.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011
Comparison of reconstruction algorithms in compressed sensing applied to biological imaging.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011
Image filtering using anisotropic structure tensor for cell membrane enhancement in 3D microscopy.
Proceedings of the 18th IEEE International Conference on Image Processing, 2011
Numerical evaluation of sampling bounds for near-optimal reconstruction in compressed sensing.
Proceedings of the 18th IEEE International Conference on Image Processing, 2011
Spherical Harmonics based extraction and annotation of cell shape in 3D time-lapse microscopy sequences.
Proceedings of the 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011
2010
Combining Local Filtering and Multiscale Analysis for Edge, Ridge, and Curvilinear Objects Detection.
IEEE Trans. Image Process., 2010
Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010
Proceedings of the International Conference on Image Processing, 2010
Curvelet analysis of kymograph for tracking bi-directional particles in fluorescence microscopy images.
Proceedings of the International Conference on Image Processing, 2010
Tracking multiple articulated objects using physics engines: Improvement using multi scale decomposition and quadtrees.
Proceedings of the International Conference on Image Processing, 2010
2009
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009
Proceedings of the International Conference on Image Processing, 2009
Proceedings of the International Conference on Image Processing, 2009
Particle tracking in fluorescent microscopy images improved by morphological source separation.
Proceedings of the International Conference on Image Processing, 2009
Proceedings of the International Conference on Image Processing, 2009
2008
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008
Improving single particle localization with an empirically calibrated Gaussian kernel.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008
A multi-threaded program architecture for an asynchronous and highly responsive GUI for automatic neuronal survival quantification.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008
Fast and automatic reconstruction of structured illumination microscopy images with multiscale products.
Proceedings of the 19th International Conference on Pattern Recognition (ICPR 2008), 2008
Proceedings of the 19th International Conference on Pattern Recognition (ICPR 2008), 2008
Morphological source separation for particle tracking in complex biological environments.
Proceedings of the 19th International Conference on Pattern Recognition (ICPR 2008), 2008
Proceedings of the International Conference on Image Processing, 2008
Proceedings of the 42nd Asilomar Conference on Signals, Systems and Computers, 2008
Proceedings of the 42nd Asilomar Conference on Signals, Systems and Computers, 2008
2007
Multiscale Variance-Stabilizing Transform for Mixed-Poisson-Gaussian Processes and its Applications in Bioimaging.
Proceedings of the International Conference on Image Processing, 2007
Proceedings of the International Conference on Image Processing, 2007
Detection of Curvilinear Objects in Noisy Image using Feature-Adapted Beamlet Transform.
Proceedings of the IEEE International Conference on Acoustics, 2007
2006
Multiple particle tracking in 3-D+t microscopy: method and application to the tracking of endocytosed quantum dots.
IEEE Trans. Image Process., 2006
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006
Proceedings of the International Conference on Image Processing, 2006
Proceedings of the 2006 IEEE International Conference on Acoustics Speech and Signal Processing, 2006
2005
Segmenting and Tracking Fluorescent Cells in Dynamic 3-D Microscopy With Coupled Active Surfaces.
IEEE Trans. Image Process., 2005
A Quantitative Criterion to Evaluate Color Segmentations Application to Cytological Images.
Proceedings of the Advanced Concepts for Intelligent Vision Systems, 2005
2004
Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004
Interacting Multiple Model Based Method to Track Moving Fluorescent Biological Spots.
Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004
Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004
Proceedings of the 17th International Conference on Pattern Recognition, 2004
Proceedings of the 17th International Conference on Pattern Recognition, 2004
Proceedings of the 2004 International Conference on Image Processing, 2004
Proceedings of the Image Analysis and Recognition: International Conference, 2004
2003
Tracking of multiple fluorescent biological objects in three dimensional video microscopy.
Proceedings of the 2003 International Conference on Image Processing, 2003
2002
Segmentation and Tracking of Migrating Cells in Videomicroscopy with Parametric Active Contours: A Tool for Cell-Based Drug Testing.
IEEE Trans. Medical Imaging, 2002
Pattern Recognit., 2002
Proceedings of the 2002 IEEE International Symposium on Biomedical Imaging, 2002
Improving Active Contours for Segmentation and Tracking of Motile Cells in Videomicroscopy.
Proceedings of the 16th International Conference on Pattern Recognition, 2002
Color Image Segmentation Based on Markov Random Field Clustering for Histological Image Analysis.
Proceedings of the 16th International Conference on Pattern Recognition, 2002
2001
Proceedings of the 2001 International Conference on Image Processing, 2001
2000
Proceedings of the 2000 International Conference on Image Processing, 2000
1997
J. Math. Imaging Vis., 1997
Adaptive detection for tracking moving biological objects in video microscopy sequences.
Proceedings of the Proceedings 1997 International Conference on Image Processing, 1997
1996
Automatic detection of spots in biological images by a wavelet-based selective filtering technique.
Proceedings of the Proceedings 1996 International Conference on Image Processing, 1996
1994
CVGIP Graph. Model. Image Process., 1994
1993
Proceedings of the Visual Communications and Image Processing '93, 1993