Jeffrey A. Thompson

According to our database, Jeffrey A. Thompson authored at least 17 papers between 2011 and 2026.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of five.

2026

A stochastic approach to k-nearest neighbors search using a fixed radius method.

Brahian Cano Urrego, Alexander Alsup, Jeffrey A. Thompson, Devin C. Koestler

Comput. Stat., January, 2026

2025

AMEND 2.0: module identification and multi-omic data integration with multiplex-heterogeneous graphs.

Samuel Boyd, Chad Slawson, Jeffrey A. Thompson

BMC Bioinform., December, 2025

FORCE: Feature-Oriented Representation with Clustering and Explanation.

Rishav Mukherjee, Jeffrey Ahearn Thompson

CoRR, April, 2025

2023

AMEND: active module identification using experimental data and network diffusion.

Samuel Boyd, Chad Slawson, Jeffrey A. Thompson

BMC Bioinform., December, 2023

2022

Assessing equivalent and inverse change in genes between diverse experiments.

Lisa Neums, Devin C. Koestler, Qing Xia, Jinxiang Hu, Shachi Patel, Shelby Bell-Glenn, Dong Pei, Bo Zhang, Samuel Boyd, Prabhakar Chalise, Jeffrey A. Thompson

Frontiers Bioinform., 2022

A Novel Framework for the Identification of Reference DNA Methylation Libraries for Reference-Based Deconvolution of Cellular Mixtures.

Shelby Bell-Glenn, Jeffrey A. Thompson, Lucas A. Salas, Devin C. Koestler

Frontiers Bioinform., 2022

2020

Improving Survival Prediction Using a Novel Feature Selection and Feature Reduction FrameworkBased on the Integration of Clinical and Molecular Data.

Lisa Neums, Richard Meier, Devin C. Koestler, Jeffrey A. Thompson

Proceedings of the Pacific Symposium on Biocomputing 2020, 2020

2019

pwrEWAS: a user-friendly tool for comprehensive power estimation for epigenome wide association studies (EWAS).

Stefan Graw, Rosalyn Henn, Jeffrey A. Thompson, Devin C. Koestler

BMC Bioinform., 2019

2018

Relevant Word Order Vectorization for Improved Natural Language Processing in Electronic Healthcare Records.

Jeffrey A. Thompson, Jinxiang Hu, Dinesh Pal Mudaranthakam, David Streeter, Lisa Neums, Michele Park, Devin C. Koestler, Byron Gajewski, Matthew S. Mayo

CoRR, 2018

2017

A Methylation-to-Expression Feature Model for Generating Accurate Prognostic Risk Scores and Identifying Disease Targets in Clear Cell Kidney Cancer.

Jeffrey A. Thompson, Carmen J. Marsit

Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017

2014

GAMI-CRM: Using de novo motif inference to detect cis-regulatory modules.

Jeffrey A. Thompson, Clare Bates Congdon

Proceedings of the IEEE Congress on Evolutionary Computation, 2014

A workflow for the computational identification of candidate regulatory elements in noncoding DNA.

Jeffrey A. Thompson, Craig R. Lessard, Samuel McFarland, Robert L. Morris, Clare Bates Congdon

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

An automated pipeline for discovering gene expression patterns associated with increased cancer survival time.

Jeffrey A. Thompson, Christine Duarte, Peter Marks, Clare Bates Congdon

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013

An exploration into improving DNA motif inference by looking for highly conserved core regions.

Jeffrey A. Thompson, Clare Bates Congdon

Proceedings of the 2013 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), 2013

Initial Results In Using de Novo Motif Inference to Detect Cis-Regulatory Modules.

Jeffrey A. Thompson, Clare Bates Congdon

Proceedings of the ACM Conference on Bioinformatics, 2013

2012

Trade-offs using GAMID for the inference of DNA motifs that are represented in only a subset of sequences of interest.

Jeffrey A. Thompson

Proceedings of the Genetic and Evolutionary Computation Conference, 2012

2011

Using genetic algorithms for the inference of motifs that are represented in only a subset of sequences of interest.

Jeffrey A. Thompson, Clare Bates Congdon

Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011