Jens Reeder

According to our database, Jens Reeder authored at least 8 papers between 2004 and 2017.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2017

Identifying and mitigating batch effects in whole genome sequencing data.

Jennifer A. Tom, Jens Reeder, William F. Forrest, Robert R. Graham, Julie Hunkapiller, Timothy W. Behrens, Tushar R. Bhangale

BMC Bioinform., 2017

2016

GMAP and GSNAP for Genomic Sequence Alignment: Enhancements to Speed, Accuracy, and Functionality.

Thomas D. Wu, Jens Reeder, Michael Lawrence, Gabe Becker, Matthew J. Brauer

Proceedings of the Statistical Genomics - Methods and Protocols, 2016

2008

Shape based indexing for faster search of RNA family databases.

Stefan Janssen, Jens Reeder, Robert Giegerich

BMC Bioinform., 2008

2007

pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows.

Jens Reeder, Peter Steffen, Robert Giegerich

Nucleic Acids Res., 2007

Locomotif: from graphical motif description to RNA motif search.

Janina Reeder, Jens Reeder, Robert Giegerich

Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007

2006

RNAshapes: an integrated RNA analysis package based on abstract shapes.

Peter Steffen, Björn Voß, Marc Rehmsmeier, Jens Reeder, Robert Giegerich

Bioinform., 2006

2005

Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction.

Jens Reeder, Robert Giegerich

Bioinform., 2005

2004

Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics.

Jens Reeder, Robert Giegerich

BMC Bioinform., 2004