Jiarui Lu

According to our database, Jiarui Lu authored at least 46 papers between 2019 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2025

Controlling Performance and Budget of a Centralized Multi-agent LLM System with Reinforcement Learning.

Bowen Jin, TJ Collins, Donghan Yu, Mert Cemri, Shenao Zhang, Mengyu Li, Jay Tang, Tian Qin, Zhiyang Xu, Jiarui Lu, Guoli Yin, Jiawei Han, Zirui Wang

CoRR, November, 2025

COMPASS: A Multi-Turn Benchmark for Tool-Mediated Planning & Preference Optimization.

Tian Qin, Felix Bai, Ting-Yao Hu, Raviteja Vemulapalli, Hema Swetha Koppula, Zhiyang Xu, Bowen Jin, Mert Cemri, Jiarui Lu, Zirui Wang, Meng Cao

CoRR, October, 2025

SimpleFold: Folding Proteins is Simpler than You Think.

Yuyang Wang, Jiarui Lu, Navdeep Jaitly, Joshua M. Susskind, Miguel Ángel Bautista

CoRR, September, 2025

AXLearn: Modular Large Model Training on Heterogeneous Infrastructure.

Mark Lee, Tom Gunter, Chang Lan, John Peebles, Hanzhi Zhou, Kelvin Zou, Sneha Bangalore, Chung-Cheng Chiu, Nan Du, Xianzhi Du, Philipp Dufter, Ruixuan Hou, Haoshuo Huang, Dongseong Hwang, Xiang Kong, Jinhao Lei, Tao Lei, Meng Li, Li Li, Jiarui Lu, Zhiyun Lu, Yiping Ma, David Qiu, Vivek Rathod, Senyu Tong, Zhucheng Tu, Jianyu Wang, Yongqiang Wang, Zirui Wang, Floris Weers, Sam Wiseman, Guoli Yin, Bowen Zhang, Xiyou Zhou, Danyang Zhuo, Cheng Leong, Ruoming Pang

CoRR, July, 2025

Measuring Scientific Capabilities of Language Models with a Systems Biology Dry Lab.

Haonan Duan, Stephen Zhewen Lu, Caitlin Fiona Harrigan, Nishkrit Desai, Jiarui Lu, Michal Koziarski, Leonardo Cotta, Chris J. Maddison

CoRR, July, 2025

FORT: Forward-Only Regression Training of Normalizing Flows.

Danyal Rehman, Oscar Davis, Jiarui Lu, Jian Tang, Michael M. Bronstein, Yoshua Bengio, Alexander Tong, Avishek Joey Bose

CoRR, June, 2025

Aligning Protein Conformation Ensemble Generation with Physical Feedback.

Jiarui Lu, Xiaoyin Chen, Stephen Zhewen Lu, Aurélie C. Lozano, Vijil Chenthamarakshan, Payel Das, Jian Tang

CoRR, May, 2025

Self-Evolving Curriculum for LLM Reasoning.

Xiaoyin Chen, Jiarui Lu, Minsu Kim, Dinghuai Zhang, Jian Tang, Alexandre Piché, Nicolas Gontier, Yoshua Bengio, Ehsan Kamalloo

CoRR, May, 2025

A text-guided protein design framework.

Shengchao Liu, Yanjing Li, Zhuoxinran Li, Anthony Gitter, Yutao Zhu, Jiarui Lu, Zhao Xu, Weili Nie, Arvind Ramanathan, Chaowei Xiao, Jian Tang, Hongyu Guo, Anima Anandkumar

Nat. Mac. Intell., 2025

MMAU: A Holistic Benchmark of Agent Capabilities Across Diverse Domains.

Guoli Yin, Haoping Bai, Shuang Ma, Feng Nan, Yanchao Sun, Zhaoyang Xu, Shen Ma, Jiarui Lu, Xiang Kong, Aonan Zhang, Dian Ang Yap, Yizhe Zhang, Karsten Ahnert, Vik Kamath, Mathias Berglund, Dominic Walsh, Tobias Gindele, Juergen Wiest, Zhengfeng Lai, Xiaoming Wang, Jiulong Shan, Meng Cao, Ruoming Pang, Zirui Wang

Proceedings of the Findings of the Association for Computational Linguistics: NAACL 2025, Albuquerque, New Mexico, USA, April 29, 2025

ToolSandbox: A Stateful, Conversational, Interactive Evaluation Benchmark for LLM Tool Use Capabilities.

Jiarui Lu, Thomas Holleis, Yizhe Zhang, Bernhard Aumayer, Feng Nan, Haoping Bai, Shuang Ma, Shen Ma, Mengyu Li, Guoli Yin, Zirui Wang, Ruoming Pang

Proceedings of the Findings of the Association for Computational Linguistics: NAACL 2025, Albuquerque, New Mexico, USA, April 29, 2025

EilMoB: Emotion-aware Incongruity Learning and Modality Bridging Network for Multi-modal Sarcasm Detection.

Haochen Zhao, Yongxiu Xu, Xinkui Lin, Jiarui Lu, Hongbo Xu, Yubin Wang

Proceedings of the 2025 International Conference on Multimedia Retrieval, 2025

Structure Language Models for Protein Conformation Generation.

Jiarui Lu, Xiaoyin Chen, Stephen Zhewen Lu, Chence Shi, Hongyu Guo, Yoshua Bengio, Jian Tang

Proceedings of the Thirteenth International Conference on Learning Representations, 2025

2024

A Data Alignment Method for Network Packet Capture Based on DBSCAN.

Jiarui Lu, Qinggang Su

J. Web Eng., December, 2024

Unsupervised Discovery of Steerable Factors When Graph Deep Generative Models Are Entangled.

Shengchao Liu, Chengpeng Wang, Jiarui Lu, Weili Nie, Hanchen Wang, Zhuoxinran Li, Bolei Zhou, Jian Tang

Trans. Mach. Learn. Res., 2024

Reaction-conditioned De Novo Enzyme Design with GENzyme.

Chenqing Hua, Jiarui Lu, Yong Liu, Odin Zhang, Jian Tang, Rex Ying, Wengong Jin, Guy Wolf, Doina Precup, Shuangjia Zheng

CoRR, 2024

ToolSandbox: A Stateful, Conversational, Interactive Evaluation Benchmark for LLM Tool Use Capabilities.

Jiarui Lu, Thomas Holleis, Yizhe Zhang, Bernhard Aumayer, Feng Nan, Felix Bai, Shuang Ma, Shen Ma, Mengyu Li, Guoli Yin, Zirui Wang, Ruoming Pang

CoRR, 2024

Apple Intelligence Foundation Language Models.

Tom Gunter, Zirui Wang, Chong Wang, Ruoming Pang, Andy Narayanan, Aonan Zhang, Bowen Zhang, Chen Chen, Chung-Cheng Chiu, David Qiu, Deepak Gopinath, Dian Ang Yap, Dong Yin, Feng Nan, Floris Weers, Guoli Yin, Haoshuo Huang, Jianyu Wang, Jiarui Lu, John Peebles, Ke Ye, Mark Lee, Nan Du, Qibin Chen, Quentin Keunebroek, Sam Wiseman, Syd Evans, Tao Lei, Vivek Rathod, Xiang Kong, Xianzhi Du, Yanghao Li, Yongqiang Wang, Yuan Gao, Zaid Ahmed, Zhaoyang Xu, Zhiyun Lu, Al Rashid, Albin Madappally Jose, Alec Doane, Alfredo Bencomo, Allison Vanderby, Andrew Hansen, Ankur Jain, Anupama Mann Anupama, Areeba Kamal, Bugu Wu, Carolina Brum, Charlie Maalouf, Chinguun Erdenebileg, Chris Dulhanty, Dominik Moritz, Doug Kang, Eduardo Jimenez, Evan Ladd, Fangping Shi, Felix Bai, Frank Chu, Fred Hohman, Hadas Kotek, Hannah Gillis Coleman, Jane Li, Jeffrey P. Bigham, Jeffery Cao, Jeff Lai, Jessica Cheung, Jiulong Shan, Joe Zhou, John Li, Jun Qin, Karanjeet Singh, Karla Vega, Kelvin Zou, Laura Heckman, Lauren Gardiner, Margit Bowler, Maria Cordell, Meng Cao, Nicole Hay, Nilesh Shahdadpuri, Otto Godwin, Pranay Dighe, Pushyami Rachapudi, Ramsey Tantawi, Roman Frigg, Sam Davarnia, Sanskruti Shah, Saptarshi Guha, Sasha Sirovica, Shen Ma, Shuang Ma, Simon Wang, Sulgi Kim, Suma Jayaram, Vaishaal Shankar, Varsha Paidi, Vivek Kumar, Xin Wang, Xin Zheng, Walker Cheng

CoRR, 2024

MMIDR: Teaching Large Language Model to Interpret Multimodal Misinformation via Knowledge Distillation.

Longzheng Wang, Xiaohan Xu, Lei Zhang, Jiarui Lu, Yongxiu Xu, Hongbo Xu, Chuang Zhang

CoRR, 2024

Fusing Neural and Physical: Augment Protein Conformation Sampling with Tractable Simulations.

Jiarui Lu, Zuobai Zhang, Bozitao Zhong, Chence Shi, Jian Tang

CoRR, 2024

ProtIR: Iterative Refinement between Retrievers and Predictors for Protein Function Annotation.

Zuobai Zhang, Jiarui Lu, Vijil Chenthamarakshan, Aurélie C. Lozano, Payel Das, Jian Tang

CoRR, 2024

Structure-Informed Protein Language Model.

Zuobai Zhang, Jiarui Lu, Vijil Chenthamarakshan, Aurélie C. Lozano, Payel Das, Jian Tang

CoRR, 2024

Study on the double-coil heat exchanger for dehumidification and heating in greenhouses: Modeling, analysis, and optimization.

Chengji Zong, He Li, Weitang Song, Shumei Zhao, Jiarui Lu, Qiangwei Ma

Comput. Electron. Agric., 2024

Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling.

Jiarui Lu, Bozitao Zhong, Zuobai Zhang, Jian Tang

Proceedings of the Twelfth International Conference on Learning Representations, 2024

Towards Foundational Models for Molecular Learning on Large-Scale Multi-Task Datasets.

Dominique Beaini, Shenyang Huang, Joao Alex Cunha, Zhiyi Li, Gabriela Moisescu-Pareja, Oleksandr Dymov, Samuel Maddrell-Mander, Callum McLean, Frederik Wenkel, Luis Müller, Jama Hussein Mohamud, Ali Parviz, Michael Craig, Michal Koziarski, Jiarui Lu, Zhaocheng Zhu, Cristian Gabellini, Kerstin Klaser, Josef Dean, Cas Wognum, Maciej Sypetkowski, Guillaume Rabusseau, Reihaneh Rabbany, Jian Tang, Christopher Morris, Mirco Ravanelli, Guy Wolf, Prudencio Tossou, Hadrien Mary, Therence Bois, Andrew W. Fitzgibbon, Blazej Banaszewski, Chad Martin, Dominic Masters

Proceedings of the Twelfth International Conference on Learning Representations, 2024

Can Large Language Models Understand Context?

Yilun Zhu, Joel Ruben Antony Moniz, Shruti Bhargava, Jiarui Lu, Dhivya Piraviperumal, Site Li, Yuan Zhang, Hong Yu, Bo-Hsiang Tseng

Proceedings of the Findings of the Association for Computational Linguistics: EACL 2024, 2024

Probing the Multi-turn Planning Capabilities of LLMs via 20 Question Games.

Yizhe Zhang, Jiarui Lu, Navdeep Jaitly

Proceedings of the 62nd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers), 2024

2023

Multi-modal molecule structure-text model for text-based retrieval and editing.

Shengchao Liu, Weili Nie, Chengpeng Wang, Jiarui Lu, Zhuoran Qiao, Ling Liu, Jian Tang, Chaowei Xiao, Animashree Anandkumar

Nat. Mac. Intell., December, 2023

MARRS: Multimodal Reference Resolution System.

Halim Cagri Ates, Shruti Bhargava, Site Li, Jiarui Lu, Siddhardha Maddula, Joel Ruben Antony Moniz, Anil Kumar Nalamalapu, Roman Hoang Nguyen, Melis Özyildirim, Alkesh Patel, Dhivya Piraviperumal, Vincent Renkens, Ankit Samal, Thy Tran, Bo-Hsiang Tseng, Hong Yu, Yuan Zhang, Rong Zou

CoRR, 2023

STEER: Semantic Turn Extension-Expansion Recognition for Voice Assistants.

Leon Liyang Zhang, Jiarui Lu, Joel Ruben Antony Moniz, Aditya Kulkarni, Dhivya Piraviperumal, Tien Dung Tran, Nicholas Tzou, Hong Yu

CoRR, 2023

Towards Foundational Models for Molecular Learning on Large-Scale Multi-Task Datasets.

Dominique Beaini, Shenyang Huang, Joao Alex Cunha, Zhiyi Li, Gabriela Moisescu-Pareja, Oleksandr Dymov, Samuel Maddrell-Mander, Callum McLean, Frederik Wenkel, Luis Müller, Jama Hussein Mohamud, Ali Parviz, Michael Craig, Michal Koziarski, Jiarui Lu, Zhaocheng Zhu, Cristian Gabellini, Kerstin Klaser, Josef Dean, Cas Wognum, Maciej Sypetkowski, Guillaume Rabusseau, Reihaneh Rabbany, Jian Tang, Christopher Morris, Ioannis Koutis, Mirco Ravanelli, Guy Wolf, Prudencio Tossou, Hadrien Mary, Therence Bois, Andrew W. Fitzgibbon, Blazej Banaszewski, Chad Martin, Dominic Masters

CoRR, 2023

The Entity-Deduction Arena: A playground for probing the conversational reasoning and planning capabilities of LLMs.

Yizhe Zhang, Jiarui Lu, Navdeep Jaitly

CoRR, 2023

Intelligent Assistant Language Understanding On Device.

Cecilia Aas, Hisham Abdelsalam, Irina Belousova, Shruti Bhargava, Jianpeng Cheng, Robert Daland, Joris Driesen, Federico Flego, Tristan Guigue, Anders Johannsen, Partha Lal, Jiarui Lu, Joel Ruben Antony Moniz, Nathan Perkins, Dhivya Piraviperumal, Stephen Pulman, Diarmuid Ó Séaghdha, David Q. Sun, John Torr, Marco Del Vecchio, Jay Wacker, Jason D. Williams, Hong Yu

CoRR, 2023

Score-based Enhanced Sampling for Protein Molecular Dynamics.

Jiarui Lu, Bozitao Zhong, Jian Tang

CoRR, 2023

A Text-guided Protein Design Framework.

Shengchao Liu, Yutao Zhu, Jiarui Lu, Zhao Xu, Weili Nie, Anthony Gitter, Chaowei Xiao, Jian Tang, Hongyu Guo, Anima Anandkumar

CoRR, 2023

5IDER: Unified Query Rewriting for Steering, Intent Carryover, Disfluencies, Entity Carryover and Repair.

Jiarui Lu, Bo-Hsiang Tseng, Joel Ruben Antony Moniz, Site Li, Xueyun Zhu, Hong Yu, Murat Akbacak

Proceedings of the 24th Annual Conference of the International Speech Communication Association, 2023

Protein Sequence and Structure Co-Design with Equivariant Translation.

Chence Shi, Chuanrui Wang, Jiarui Lu, Bozitao Zhong, Jian Tang

Proceedings of the Eleventh International Conference on Learning Representations, 2023

STEER: Semantic Turn Extension-Expansion Recognition for Voice Assistants.

Leon Liyang Zhang, Jiarui Lu, Joel Ruben Antony Moniz, Aditya Kulkarni, Dhivya Piraviperumal, Tien Dung Tran, Nick Tzou, Hong Yu

Proceedings of the 2023 Conference on Empirical Methods in Natural Language Processing: EMNLP 2023, 2023

2022

ReLMole: Molecular Representation Learning Based on Two-Level Graph Similarities.

Zewei Ji, Runhan Shi, Jiarui Lu, Fang Li, Yang Yang

J. Chem. Inf. Model., 2022

TorchDrug: A Powerful and Flexible Machine Learning Platform for Drug Discovery.

Zhaocheng Zhu, Chence Shi, Zuobai Zhang, Shengchao Liu, Minghao Xu, Xinyu Yuan, Yangtian Zhang, Jun-Kun Chen, Huiyu Cai, Jiarui Lu, Chang Ma, Runcheng Liu, Louis-Pascal A. C. Xhonneux, Meng Qu, Jian Tang

CoRR, 2022

PEER: A Comprehensive and Multi-Task Benchmark for Protein Sequence Understanding.

Minghao Xu, Zuobai Zhang, Jiarui Lu, Zhaocheng Zhu, Yangtian Zhang, Chang Ma, Runcheng Liu, Jian Tang

Proceedings of the Advances in Neural Information Processing Systems 35: Annual Conference on Neural Information Processing Systems 2022, 2022

2021

KenDTI: An Ensemble Model for Predicting Drug-Target Interaction by Integrating Multi-Source Information.

Zhimiao Yu, Jiarui Lu, Yuan Jin, Yang Yang

IEEE ACM Trans. Comput. Biol. Bioinform., 2021

A compositional mediation model for a binary outcome: Application to microbiome studies.

Michael B. Sohn, Jiarui Lu, Hongzhe Li

Bioinform., 2021

CREAD: Combined Resolution of Ellipses and Anaphora in Dialogues.

Bo-Hsiang Tseng, Shruti Bhargava, Jiarui Lu, Joel Ruben Antony Moniz, Dhivya Piraviperumal, Lin Li, Hong Yu

Proceedings of the 2021 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, 2021

Dynamic Characteristics of Two-Mass Inertial Pipeline Robot Driven by Noncircular Gears.

Dawei Liu, Jiarui Lu

Proceedings of the Intelligent Robotics and Applications - 14th International Conference, 2021

2019

S-DenseNet: A DenseNet Compression Model Based on Convolution Grouping Strategy Using Skyline Method.

Changyong Yu, Xin He, Haitao Ma, Xin Qi, Jiarui Lu, Yuhai Zhao

IEEE Access, 2019