John Boyle

According to our database, John Boyle authored at least 20 papers between 1993 and 2018.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2018

Chemlistem: chemical named entity recognition using recurrent neural networks.

Peter Corbett, John Boyle

J. Cheminformatics, 2018

Improving the learning of chemical-protein interactions from literature using transfer learning and specialized word embeddings.

Peter Corbett, John Boyle

Database J. Biol. Databases Curation, 2018

2017

Secure Data Processing in the Cloud.

Zoltán Ádám Mann, Eliot E. Salant, Mike Surridge, Dhouha Ayed, John Boyle, Maritta Heisel, Andreas Metzger, Paul Mundt

Proceedings of the Advances in Service-Oriented and Cloud Computing, 2017

2012

Fastbreak: a tool for analysis and visualization of structural variations in genomic data.

Ryan Bressler, Jake Lin, Andrea Eakin, Thomas Robinson, Richard Kreisberg, Hector Rovira, Theo A. Knijnenburg, John Boyle, Ilya Shmulevich

EURASIP J. Bioinform. Syst. Biol., 2012

Hydra: a scalable proteomic search engine which utilizes the Hadoop distributed computing framework.

Steven Lewis, Attila Csordas, Sarah A. Killcoyne, Henning Hermjakob, Michael R. Hoopmann, Robert L. Moritz, Eric W. Deutsch, John Boyle

BMC Bioinform., 2012

Methods for visual mining of genomic and proteomic data atlases.

John Boyle, Richard Kreisberg, Ryan Bressler, Sarah A. Killcoyne

BMC Bioinform., 2012

Interfaces to PeptideAtlas: a case study of standard data access systems.

Sarah A. Killcoyne, Jeremy Handcock, Thomas Robinson, Eric W. Deutsch, John Boyle

Briefings Bioinform., 2012

2011

EPEPT: A web service for enhanced P-value estimation in permutation tests.

Theo A. Knijnenburg, Jake Lin, Hector Rovira, John Boyle, Ilya Shmulevich

BMC Bioinform., 2011

2010

SEQADAPT: an adaptable system for the tracking, storage and analysis of high throughput sequencing experiments.

David B. Burdick, Christopher C. Cavnor, Jeremy Handcock, Sarah A. Killcoyne, Jake Lin, Bruz Marzolf, Stephen A. Ramsey, Hector Rovira, Ryan Bressler, Ilya Shmulevich, John Boyle

BMC Bioinform., 2010

An Integration Architecture Designed to Deal with the Issues of Biological Scope, Scale and Complexity.

Hector Rovira, Sarah A. Killcoyne, Ilya Shmulevich, John Boyle

Proceedings of the Data Integration in the Life Sciences, 7th International Conference, 2010

Howdah - A Flexible Pipeline Framework for Analyzing Genomic Data.

Steven Lewis, Sheila Reynolds, Hector Rovira, Mike O'Leary, Sarah A. Killcoyne, Ilya Shmulevich, John Boyle

Proceedings of the Cloud Computing, Second International Conference, 2010

2009

Managing Chaos: Lessons Learned Developing Software in the Life Sciences.

Sarah A. Killcoyne, John Boyle

Comput. Sci. Eng., 2009

Adaptable data management for systems biology investigations.

John Boyle, Hector Rovira, Christopher C. Cavnor, David B. Burdick, Sarah A. Killcoyne, Ilya Shmulevich

BMC Bioinform., 2009

2008

Systems biology driven software design for the research enterprise.

John Boyle, Christopher C. Cavnor, Sarah A. Killcoyne, Ilya Shmulevich

BMC Bioinform., 2008

2005

Gene-Expression Omnibus integration and clustering Tools in SeqExpress.

John Boyle

Bioinform., 2005

2004

SeqExpress: desktop analysis and visualization tool for gene expression experiments.

John Boyle

Bioinform., 2004

1996

From WIMPS to 3D: The Development of AMAZE.

John Boyle, Scott Leishman, Peter M. D. Gray

J. Vis. Lang. Comput., 1996

1995

The Design of 3D metaphors for Database Visualisation.

John Boyle, Peter M. D. Gray

Proceedings of the Visual Database Systems 3, 1995

1994

Design of a 3D User Interface to a Database.

John Boyle, John E. Fothergill, Peter M. D. Gray

Proceedings of the Interfaces to Database Systems (IDS94), 1994

1993

Database Issues for Data Visualization: Interaction, User Interfaces, and Presentation.

John Boyle, Stephen G. Eick, Matthias L. Hemmje, Daniel A. Keim, John Peter Lee, Eric E. Sumner Jr.

Proceedings of the database Issues for Data Visualization: IEEE Visualization '93 Workshop, 1993