John E. Karro

According to our database, John E. Karro authored at least 10 papers between 2006 and 2016.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2016

phRAIDER: Pattern-Hunter based Rapid Ab Initio Detection of Elementary Repeats.

Carly E. Schaeffer, Nathaniel D. Figueroa, Xiaolin Liu, John E. Karro

Bioinform., 2016

2014

A MATLAB-based tool for accurate detection of perfect overlapping and nested inverted repeats in DNA sequences.

Sutharzan Sreeskandarajan, Michelle M. Flowers, John E. Karro, Chun Liang

Bioinform., 2014

2013

RAIDER: Rapid Ab Initio Detection of Elementary Repeats.

Nathaniel D. Figueroa, Xiaolin Liu, Jiajun Wang, John E. Karro

Proceedings of the Advances in Bioinformatics and Computational Biology, 2013

2012

Poster: De novo expression fragment assembly from Spanning Trees (EAST).

Yuan Zhang, Dhananjai Madhava Rao, Mufit Ozden, Jens Mueller, Praveen Raj Kumar, Chun Liang, John E. Karro

Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012

Poster: Sequence classification of homopolymer emissions (SCOPE).

James T. Morton, Patricia Abrudan, Chun Liang, John E. Karro

Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012

2011

Workshop: Transcript assembly through a d²-based MST approach.

Yuan Zhang, Dhananjai Madhava Rao, Jens Mueller, Mufit Ozden, Chun Liang, John E. Karro

Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

2010

PEACE: Parallel Environment for Assembly and Clustering of Gene Expression.

Dhananjai Madhava Rao, J. C. Moler, Mufit Ozden, Y. Zhang, C. Liang, John E. Karro

Nucleic Acids Res., 2010

2008

Is there an acceleration of the <i>CpG</i> transition rate during the mammalian radiation?

Martin Peifer, John E. Karro, H. H. von Grünberg

Bioinform., 2008

2007

Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation.

John E. Karro, Yangpan Yan, Deyou Zheng, Zhaolei Zhang, Nicholas Carriero, Philip Cayting, Paul M. Harrison, Mark Gerstein

Nucleic Acids Res., 2007

2006

PseudoPipe: an automated pseudogene identification pipeline.

Zhaolei Zhang, Nicholas Carriero, Deyou Zheng, John E. Karro, Paul M. Harrison, Mark Gerstein

Bioinform., 2006