John E. Reid

According to our database, John E. Reid authored at least 9 papers between 2009 and 2020.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2020

GPseudoClust: deconvolution of shared pseudo-profiles at single-cell resolution.

Magdalena E. Strauß, Paul D. W. Kirk, John E. Reid, Lorenz Wernisch

Bioinform., 2020

2019

Projection layers improve deep learning models of regulatory DNA function.

Alex Hawkins-Hooker, Henry Kenlay, John E. Reid

F1000Research, 2019

SCRAM: Spatially Coherent Randomized Attention Maps.

Dan Andrei Calian, Peter Roelants, Jacques Calì, Ben Carr, Krishna Dubba, John E. Reid, Dell Zhang

CoRR, 2019

GPseudoRank: a permutation sampler for single cell orderings.

Magdalena E. Strauß, John E. Reid, Lorenz Wernisch

Bioinform., 2019

2018

Branch-recombinant Gaussian processes for analysis of perturbations in biological time series.

Christopher A. Penfold, Anastasiya Sybirna, John E. Reid, Yun Huang, Lorenz Wernisch, Zoubin Ghahramani, Murray Grant, M. Azim Surani

Bioinform., 2018

2017

Clusternomics: Integrative context-dependent clustering for heterogeneous datasets.

Evelina Gabasova, John E. Reid, Lorenz Wernisch

PLoS Comput. Biol., 2017

2016

Pseudotime estimation: deconfounding single cell time series.

John E. Reid, Lorenz Wernisch

Bioinform., 2016

2010

An alignment-free model for comparison of regulatory sequences.

Hashem Koohy, Nigel P. Dyer, John E. Reid, Georgy Koentges, Sascha Ott

Bioinform., 2010

2009

Transcriptional programs: Modelling higher order structure in transcriptional control.

John E. Reid, Sascha Ott, Lorenz Wernisch

BMC Bioinform., 2009