Kim-Anh Lê Cao

According to our database, Kim-Anh Lê Cao authored at least 25 papers between 2009 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

MetaGenePipe: An Automated, Portable Pipeline for Contig-based Functional and Taxonomic Analysis.

Babak Shaban, Maria Mar del Quiroga, Robert Turnbull, Edoardo Tescari, Kim-Anh Lê Cao, Heroen Verbruggen

J. Open Source Softw., March, 2023

PLSDA-batch: a multivariate framework to correct for batch effects in microbiome data.

Yiwen Wang, Kim-Anh Lê Cao

Briefings Bioinform., March, 2023

2022

timeOmics: an R package for longitudinal multi-omics data integration.

Antoine Bodein, Marie-Pier Scott-Boyer, Olivier Périn, Kim-Anh Lê Cao, Arnaud Droit

Bioinform., 2022

Statistical challenges in longitudinal microbiome data analysis.

Saritha Kodikara, Susan Ellul, Kim-Anh Lê Cao

Briefings Bioinform., 2022

Sincast: a computational framework to predict cell identities in single-cell transcriptomes using bulk atlases as references.

Yidi Deng, Jarny Choi, Kim-Anh Lê Cao

Briefings Bioinform., 2022

2021

multiomics: A user-friendly multi-omics data harmonisation R pipeline.

Tyrone Chen, Al J. Abadi, Kim-Anh Lê Cao, Sonika Tyagi

F1000Research, 2021

A field guide to cultivating computational biology.

Anne E. Carpenter, Casey S. Greene, Piero Carnici, Benilton S. Carvalho, Michiel de Hoon, Stacey D. Finley, Kim-Anh Lê Cao, Jerry S. H. Lee, Luigi Marchionni, Suzanne Sindi, Fabian J. Theis, Gregory P. Way, Jean Y. H. Yang, Elana J. Fertig

CoRR, 2021

A multi-modal data harmonisation approach for discovery of COVID-19 drug targets.

Tyrone Chen, Melcy Philip, Kim-Anh Lê Cao, Sonika Tyagi

Briefings Bioinform., 2021

2020

A simple, scalable approach to building a cross-platform transcriptome atlas.

Paul W. Angel, Nadia Rajab, Yidi Deng, Chris M. Pacheco, Tyrone Chen, Kim-Anh Lê Cao, Jarny Choi, Christine A. Wells

PLoS Comput. Biol., 2020

Managing batch effects in microbiome data.

Yiwen Wang, Kim-Anh Lê Cao

Briefings Bioinform., 2020

2019

DIABLO: an integrative approach for identifying key molecular drivers from multi-omics assays.

Amrit Singh, Casey P. Shannon, Benoît Gautier, Florian Rohart, Michaël Vacher, Scott J. Tebbutt, Kim-Anh Lê Cao

Bioinform., 2019

2017

mixOmics: An R package for 'omics feature selection and multiple data integration.

Florian Rohart, Benoît Gautier, Amrit Singh, Kim-Anh Lê Cao

PLoS Comput. Biol., 2017

MINT: a multivariate integrative method to identify reproducible molecular signatures across independent experiments and platforms.

Florian Rohart, Aida Eslami, Nicholas Matigian, Stéphanie Bougeard, Kim-Anh Lê Cao

BMC Bioinform., 2017

PhosphoPICK-SNP: quantifying the effect of amino acid variants on protein phosphorylation.

Ralph Patrick, Bostjan Kobe, Kim-Anh Lê Cao, Mikael Bodén

Bioinform., 2017

2015

PhosphoPICK: modelling cellular context to map kinase-substrate phosphorylation events.

Ralph Patrick, Kim-Anh Lê Cao, Bostjan Kobe, Mikael Bodén

Bioinform., 2015

2012

Mapping the stabilome: a novel computational method for classifying metabolic protein stability.

Ralph Patrick, Kim-Anh Lê Cao, Melissa J. Davis, Bostjan Kobe, Mikael Bodén

BMC Syst. Biol., 2012

Independent Principal Component Analysis for biologically meaningful dimension reduction of large biological data sets.

Fangzhou Yao, Jeff Coquery, Kim-Anh Lê Cao

BMC Bioinform., 2012

A novel approach for biomarker selection and theintegration of repeated measures experiments from two assays.

Benoit Liquet, Kim-Anh Lê Cao, Hakim Hocini, Rodolphe Thiébaut

BMC Bioinform., 2012

Visualising associations between paired 'omics' data sets.

Ignacio González, Kim-Anh Lê Cao, Melissa J. Davis, Sébastien Déjean

BioData Min., 2012

2011

Sparse PLS Discriminant Analysis: biologically relevant feature selection and graphical displays for multiclass problems.

Kim-Anh Lê Cao, Simon Boitard, Philippe Besse

BMC Bioinform., 2011

Sorting the nuclear proteome.

Denis C. Bauer, Kai Willadsen, Fabian A. Buske, Kim-Anh Lê Cao, Timothy L. Bailey, Graham Dellaire, Mikael Bodén

Bioinform., 2011

2010

Integrative mixture of experts to combine clinical factors and gene markers.

Kim-Anh Lê Cao, Emmanuelle Meugnier, Geoffrey J. McLachlan

Bioinform., 2010

2009

Multiclass classification and gene selection with a stochastic algorithm.

Kim-Anh Lê Cao, Agnès Bonnet, Sébastien Gadat

Comput. Stat. Data Anal., 2009

Sparse canonical methods for biological data integration: application to a cross-platform study.

Kim-Anh Lê Cao, Pascal G. P. Martin, Christèle Robert-Granié, Philippe Besse

BMC Bioinform., 2009

integrOmics: an R package to unravel relationships between two omics datasets.

Kim-Anh Lê Cao, Ignacio González, Sébastien Déjean

Bioinform., 2009