Anne E. Carpenter

Orcid: 0000-0003-1555-8261

Affiliations:
  • Broad Institute of MIT and Harvard, Cambridge, USA


According to our database1, Anne E. Carpenter authored at least 33 papers between 2005 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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PhD thesis 
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Links

Online presence:

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Bibliography

2024
Insights into Drug Cardiotoxicity from Biological and Chemical Data: The First Public Classifiers for FDA Drug-Induced Cardiotoxicity Rank.
J. Chem. Inf. Model., February, 2024

2023
Pseudo-Labeling Enhanced by Privileged Information and Its Application to In Situ Sequencing Images.
Proceedings of the Thirty-Second International Joint Conference on Artificial Intelligence, 2023

2022
Predicting drug polypharmacology from cell morphology readouts using variational autoencoder latent space arithmetic.
PLoS Comput. Biol., 2022

2021
Developing open-source software for bioimage analysis: opportunities and challenges.
F1000Research, 2021

A field guide to cultivating computational biology.
CoRR, 2021

CellProfiler 4: improvements in speed, utility and usability.
BMC Bioinform., 2021

CellProfiler Analyst 3.0: accessible data exploration and machine learning for image analysis.
Bioinform., 2021

2020
Bridging Domain and Data.
Patterns, 2020

Keras R-CNN: library for cell detection in biological images using deep neural networks.
BMC Bioinform., 2020

2019
DoGNet: A deep architecture for synapse detection in multiplexed fluorescence images.
PLoS Comput. Biol., 2019

Capturing Single-Cell Phenotypic Variation via Unsupervised Representation Learning.
Proceedings of the International Conference on Medical Imaging with Deep Learning, 2019

2018
Applying Faster R-CNN for Object Detection on Malaria Images.
CoRR, 2018

Combining morphological and migration profiles of in vitro time-lapse data.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Weakly Supervised Learning of Single-Cell Feature Embeddings.
Proceedings of the 2018 IEEE Conference on Computer Vision and Pattern Recognition, 2018

2017
Applying Faster R-CNN for Object Detection on Malaria Images.
Proceedings of the 2017 IEEE Conference on Computer Vision and Pattern Recognition Workshops, 2017

2016
QSAR-Driven Discovery of Novel Chemical Scaffolds Active against <i>Schistosoma mansoni</i>.
J. Chem. Inf. Model., 2016

CP-CHARM: segmentation-free image classification made accessible.
BMC Bioinform., 2016

CellProfiler Analyst: interactive data exploration, analysis and classification of large biological image sets.
Bioinform., 2016

2015
CellProfiler Tracer: exploring and validating high-throughput, time-lapse microscopy image data.
BMC Bioinform., 2015

Analysis of High-throughput Microscopy Videos: Catching Up with Cell Dynamics.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015 - 18th International Conference Munich, Germany, October 5, 2015

Symmetry-based mitosis detection in time-lapse microscopy.
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

2014
ProtocolNavigator: emulation-based software for the design, documentation and reproduction biological experiments.
Bioinform., 2014

Behavior in the Time of Cholera: Evidence from the 2008-2009 Cholera Outbreak in Zimbabwe.
Proceedings of the Social Computing, Behavioral-Cultural Modeling and Prediction, 2014

2011
Visualization of Parameter Space for Image Analysis.
IEEE Trans. Vis. Comput. Graph., 2011

Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software.
Bioinform., 2011

Extracting biomedically important information from large, automated imaging experiments.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

2010
Towards automated high-throughput screening of C. elegans on agar
CoRR, 2010

Morphology-Guided Graph Search for Untangling Objects: <i>C. elegans</i> Analysis.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

Resolving clustered worms via probabilistic shape models.
Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010

2009
Introduction to the Quantitative Analysis of Two-Dimensional Fluorescence Microscopy Images for Cell-Based Screening.
PLoS Comput. Biol., 2009

Ultrasome: efficient aberration caller for copy number studies of ultra-high resolution.
Bioinform., 2009

2008
CellProfiler Analyst: data exploration and analysis software for complex image-based screens.
BMC Bioinform., 2008

2005
Voronoi-Based Segmentation of Cells on Image Manifolds.
Proceedings of the Computer Vision for Biomedical Image Applications, 2005


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