Kutlu Ö. Ülgen

According to our database, Kutlu Ö. Ülgen authored at least 15 papers between 2005 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Comprehensive genome-scale metabolic model of the human pathogen Cryptococcus neoformans: A platform for understanding pathogen metabolism and identifying new drug targets.

Enes Fahri Tezcan, Yigit Demirtas, Zeynep Petek Cakar, Kutlu Ö. Ülgen

Frontiers Bioinform., May, 2023

2022

Exploiting Pretrained Biochemical Language Models for Targeted Drug Design.

Gökçe Uludogan, Elif Özkirimli, Kutlu Ö. Ülgen, Nilgün Karali, Arzucan Özgür

CoRR, 2022

2020

Preliminary Studies on Flow Assisted Propagation of Fluorescent Microbeads in Microfluidic Channels for Molecular Communication Systems.

Merve Gorkem Durmaz, Abdurrahman Dilmac, Berk Camli, Elif Gencturk, Zeliha Cansu Canbek Ozdil, Ali Emre Pusane, Arda Deniz Yalcinkaya, Kutlu Ö. Ülgen, Tuna Tugcu

Proceedings of the Bio-inspired Information and Communication Technologies, 2020

2017

Sphingosine kinase 1 (SK1) allosteric inhibitors that target the dimerization site.

Ozge Bayraktar, Elif Özkirimli Ölmez, Kutlu Ö. Ülgen

Comput. Biol. Chem., 2017

2015

Identification of potential Tpx inhibitors against pathogen-host interactions.

Utku Deniz, Kutlu Ö. Ülgen, Elif Özkirimli Ölmez

Comput. Biol. Chem., 2015

2014

Targeting the Akt1 allosteric site to identify novel scaffolds through virtual screening.

Oya Gursoy Yilmaz, Elif Özkirimli Ölmez, Kutlu Ö. Ülgen

Comput. Biol. Chem., 2014

2013

PHISTO: pathogen-host interaction search tool.

Saliha Durmus Tekir, Tunahan Çakir, Emre Ardiç, Ali Semih Sayilirbas, Gökhan Konuk, Mithat Konuk, Hasret Sariyer, Azat Ugurlu, Ilknur Karadeniz, Arzucan Özgür, Fatih Erdogan Sevilgen, Kutlu Ö. Ülgen

Bioinform., 2013

2011

Reconstruction and crosstalk of protein-protein interaction networks of Wnt and Hedgehog signaling in Drosophila melanogaster.

Aysun Eren Toku, Saliha Durmus Tekir, Fatma Betül Kavun Özbayraktar, Kutlu Ö. Ülgen

Comput. Biol. Chem., 2011

Stoichiometric network reconstruction and analysis of yeast sphingolipid metabolism incorporating different states of hydroxylation.

Fatma Betül Kavun Özbayraktar, Kutlu Ö. Ülgen

Biosyst., 2011

2010

Drug target identification in sphingolipid metabolism by computational systems biology tools: Metabolic control analysis and metabolic pathway analysis.

Fatma Betül Kavun Özbayraktar, Kutlu Ö. Ülgen

J. Biomed. Informatics, 2010

2009

Drug targets for tumorigenesis: Insights from structural analysis of EGFR signaling network.

Saliha Durmus Tekir, Kazim Yalçin Arga, Kutlu Ö. Ülgen

J. Biomed. Informatics, 2009

2007

Effect of carbon source perturbations on transcriptional regulation of metabolic fluxes in Saccharomyces cerevisiae.

Tunahan Çakir, Betül Kirdar, Z. Ilsen Önsan, Kutlu Ö. Ülgen, Jens Nielsen

BMC Syst. Biol., 2007

2006

Analysis of enzymopathies in the human red blood cells by constraint-based stoichiometric modeling approaches.

Saliha Durmus Tekir, Tunahan Çakir, Kutlu Ö. Ülgen

Comput. Biol. Chem., 2006

Integrative investigation of metabolic and transcriptomic data.

Pinar Pir, Betül Kirdar, Andrew Hayes, Z. Ilsen Önsan, Kutlu Ö. Ülgen, Stephen G. Oliver

BMC Bioinform., 2006

2005

Modelling of calcium dynamics in brain energy metabolism and Alzheimer's disease.

S. Tiveci, Ata Akin, Tunahan Çakir, H. Saybasili, Kutlu Ö. Ülgen

Comput. Biol. Chem., 2005