Arzucan Özgür
Orcid: 0000-0001-8376-1056Affiliations:
- Bogaziçi University, Department of Computer Engineering, Istanbul, Turkey
- University of Michigan, Department of EECS, Ann Arbor, MI, USA
According to our database1,
Arzucan Özgür
authored at least 99 papers
between 2004 and 2024.
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Bibliography
2024
Detecting Hate Speech in Turkish Print Media: A Corpus and A Hybrid Approach with Target-oriented Linguistic Knowledge.
Proceedings of the 7th Workshop on Challenges and Applications of Automated Extraction of Socio-political Events from Text, 2024
Overview of the Hate Speech Detection in Turkish and Arabic Tweets (HSD-2Lang) Shared Task at CASE 2024.
Proceedings of the 7th Workshop on Challenges and Applications of Automated Extraction of Socio-political Events from Text, 2024
2023
Improving the filtering of false positive single nucleotide variations by combining genomic features with quality metrics.
Bioinform., December, 2023
A Framework for Improving the Generalizability of Drug-Target Affinity Prediction Models.
J. Comput. Biol., November, 2023
A Computational Software for Training Robust Drug-Target Affinity Prediction Models: pydebiaseddta.
J. Comput. Biol., November, 2023
Frontiers Digit. Health, March, 2023
ACM Trans. Internet Techn., 2023
Evaluation of GPT and BERT-based models on identifying protein-protein interactions in biomedical text.
CoRR, 2023
Proceedings of the 31st Signal Processing and Communications Applications Conference, 2023
A Dataset for Investigating the Impact of Context for Offensive Language Detection in Tweets.
Proceedings of the Findings of the Association for Computational Linguistics: EMNLP 2023, 2023
TULAP - An Accessible and Sustainable Platform for Turkish Natural Language Processing Resources.
Proceedings of the 17th Conference of the European Chapter of the Association for Computational Linguistics. EACL 2023, 2023
Proceedings of the 2023 International Conference on Autonomous Agents and Multiagent Systems, 2023
2022
Resources for Turkish dependency parsing: introducing the BOUN Treebank and the BoAT annotation tool.
Lang. Resour. Evaluation, 2022
CoRR, 2022
CoRR, 2022
A Hybrid Deep Dependency Parsing Approach Enhanced With Rules and Morphology: A Case Study for Turkish.
IEEE Access, 2022
Proceedings of the Findings of the Association for Computational Linguistics: NAACL 2022, 2022
Proceedings of the Findings of the Association for Computational Linguistics: EMNLP 2022, 2022
Proceedings of the IEEE International Conference on Big Data, 2022
Proceedings of the ALTNLP The International Conference and workshop on Agglutanative Language Technologies as a challenge of Natural Language Processing, 2022
Proceedings of the 60th Annual Meeting of the Association for Computational Linguistics: Student Research Workshop, 2022
2021
Proceedings of the 29th Signal Processing and Communications Applications Conference, 2021
Proceedings of the 29th Signal Processing and Communications Applications Conference, 2021
BOUN at SemEval-2021 Task 9: Text Augmentation Techniques for Fact Verification in Tabular Data.
Proceedings of the 15th International Workshop on Semantic Evaluation, 2021
Balancing Methods for Multi-label Text Classification with Long-Tailed Class Distribution.
Proceedings of the 2021 Conference on Empirical Methods in Natural Language Processing, 2021
PIDNA at BioASQ MESINESP: Hybrid Semantic Indexing for Biomedical Articles in Spanish.
Proceedings of the Working Notes of CLEF 2021 - Conference and Labs of the Evaluation Forum, Bucharest, Romania, September 21st - to, 2021
2020
A Hybrid Approach to Dependency Parsing: Combining Rules and Morphology with Deep Learning.
CoRR, 2020
Exploring Chemical Space using Natural Language Processing Methodologies for Drug Discovery.
CoRR, 2020
The RELX Dataset and Matching the Multilingual Blanks for Cross-lingual Relation Classification.
Proceedings of the Findings of the Association for Computational Linguistics: EMNLP 2020, 2020
Vapur: A Search Engine to Find Related Protein - Compound Pairs in COVID-19 Literature.
Proceedings of the 1st Workshop on NLP for COVID-19@ EMNLP 2020, Online, December 2020, 2020
An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents.
Proceedings of the Working Notes of CLEF 2020, 2020
BOUN-REX at CLEF-2020 ChEMU Task 2: Evaluating Pretrained Transformers for Event Extraction.
Proceedings of the Working Notes of CLEF 2020, 2020
2019
Machine learning-based identification and rule-based normalization of adverse drug reactions in drug labels.
BMC Bioinform., 2019
BMC Bioinform., 2019
BMC Bioinform., 2019
Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine.
Database J. Biol. Databases Curation, 2019
Proceedings of the 27th Signal Processing and Communications Applications Conference, 2019
Proceedings of the International Conference on Recent Advances in Natural Language Processing, 2019
BOUN-ISIK Participation: An Unsupervised Approach for the Named Entity Normalization and Relation Extraction of Bacteria Biotopes.
Proceedings of The 5th Workshop on BioNLP Open Shared Tasks, 2019
Proceedings of the 13th Linguistic Annotation Workshop, 2019
2018
J. Assoc. Inf. Sci. Technol., 2018
CoRR, 2018
Ontology-based literature mining and class effect analysis of adverse drug reactions associated with neuropathy-inducing drugs.
J. Biomed. Semant., 2018
A novel methodology on distributed representations of proteins using their interacting ligands.
Bioinform., 2018
A Morphology-Based Representation Model for LSTM-Based Dependency Parsing of Agglutinative Languages.
Proceedings of the CoNLL 2018 Shared Task: Multilingual Parsing from Raw Text to Universal Dependencies, Brussels, Belgium, October 31, 2018
2017
Ontology-based literature mining of E. coli vaccine-associated gene interaction networks.
J. Biomed. Semant., 2017
Bioinform., 2017
Automatic query generation using word embeddings for retrieving passages describing experimental methods.
Database J. Biol. Databases Curation, 2017
Extracting Adverse Drug Reactions using Deep Learning and Dictionary Based Approaches.
Proceedings of the 2017 Text Analysis Conference, 2017
Description of the BOUN System for the Trilingual Entity Detection and Linking Tasks at TAC KBP 2017.
Proceedings of the 2017 Text Analysis Conference, 2017
Political opinion/sentiment prediction via long short term memory recurrent neural networks on Twitter.
Proceedings of the 25th Signal Processing and Communications Applications Conference, 2017
Proceedings of the 25th Signal Processing and Communications Applications Conference, 2017
BUSEM at SemEval-2017 Task 4A Sentiment Analysis with Word Embedding and Long Short Term Memory RNN Approaches.
Proceedings of the 11th International Workshop on Semantic Evaluation, 2017
2016
Automated Neuroanatomical Relation Extraction: A Linguistically Motivated Approach with a PVT Connectivity Graph Case Study.
Frontiers Neuroinformatics, 2016
A comparative study of SMILES-based compound similarity functions for drug-target interaction prediction.
BMC Bioinform., 2016
BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.
Database J. Biol. Databases Curation, 2016
The Interaction Network Ontology-supported modeling and mining of complex interactions represented with multiple keywords in biomedical literature.
BioData Min., 2016
Sentence Similarity based on Dependency Tree Kernels for Multi-document Summarization.
Proceedings of the Tenth International Conference on Language Resources and Evaluation LREC 2016, 2016
Named Entity Recognition on Twitter for Turkish using Semi-supervised Learning with Word Embeddings.
Proceedings of the Tenth International Conference on Language Resources and Evaluation LREC 2016, 2016
Proceedings of the Tenth International Conference on Language Resources and Evaluation LREC 2016, 2016
Towards Building a Political Protest Database to Explain Changes in the Welfare State.
Proceedings of the 10th SIGHUM Workshop on Language Technology for Cultural Heritage, 2016
Ignet: A Centrality and INO-based Web System for Analyzing and Visualizing Literature-mined Networks.
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016
Ontology-Based Categorization of Bacteria and Habitat Entities using Information Retrieval Techniques.
Proceedings of the 4th BioNLP Shared Task Workshop, BioNLP 2016, 2016
2015
BMC Bioinform., December, 2015
Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions.
J. Biomed. Semant., 2015
GLASS: a comprehensive database for experimentally validated GPCR-ligand associations.
Bioinform., 2015
Extension of the Interaction Network Ontology for Literature Mining of Gene-gene Interaction Networks from Sentences with Multiple Interaction Keywords.
Proceedings of International Workshop on Biomedical Data Mining, 2015
Proceedings of the Computational Linguistics and Intelligent Text Processing, 2015
2014
Proceedings of the 2014 22nd Signal Processing and Communications Applications Conference (SIU), 2014
Proceedings of the Ninth International Conference on Language Resources and Evaluation, 2014
Improving Named Entity Recognition for Morphologically Rich Languages Using Word Embeddings.
Proceedings of the 13th International Conference on Machine Learning and Applications, 2014
Proceedings of the 2014 Conference on Empirical Methods in Natural Language Processing, 2014
Proceedings of the 2014 Conference on Empirical Methods in Natural Language Processing, 2014
Expanding machine translation training data with an out-of-domain corpus using language modeling based vocabulary saturation.
Proceedings of the 11th Conference of the Association for Machine Translation in the Americas: MT Researchers Track, 2014
2013
Polibits, 2013
Proceedings of the 7th International Workshop on Semantic Evaluation, 2013
Proceedings of the Computational Linguistics and Intelligent Text Processing, 2013
Bacteria Biotope Detection, Ontology-based Normalization, and Relation Extraction using Syntactic Rules.
Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, 2013
2012
Identification of fever and vaccine-associated gene interaction networks using ontology-based literature mining.
J. Biomed. Semant., 2012
2011
BMC Bioinform., 2011
Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology.
J. Biomed. Semant., 2011
2010
PhD thesis, 2010
Proceedings of the COLING 2010, 2010
2009
Nucleic Acids Res., 2009
Proceedings of the 2009 Conference on Empirical Methods in Natural Language Processing, 2009
Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, BioNLP@HLT-NAACL 2009, 2009
2008
Identifying gene-disease associations using centrality on a literature mined gene-interaction network.
Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008
2007
Semi-Supervised Classification for Extracting Protein Interaction Sentences using Dependency Parsing.
Proceedings of the EMNLP-CoNLL 2007, 2007
2006
Electron. Commer. Res. Appl., 2006
Classification of Skewed and Homogenous Document Corpora with Class-Based and Corpus-Based Keywords.
Proceedings of the KI 2006: Advances in Artificial Intelligence, 2006
2005
Proceedings of the Computer and Information Sciences, 2005
2004
Proceedings of the Computer and Information Sciences, 2004