Linda J. Broadbelt

According to our database, Linda J. Broadbelt authored at least 14 papers between 2003 and 2026.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2026

Development of Reaction-Centered Encoders and Benchmarking of Enzyme-Reaction Pair Models.

Stefan C. Pate, Eric H. Wang, Linda J. Broadbelt, Keith E. J. Tyo

J. Chem. Inf. Model., 2026

2023

Pickaxe: a Python library for the prediction of novel metabolic reactions.

Kevin M. Shebek, Jonathan Strutz, Linda J. Broadbelt, Keith E. J. Tyo

BMC Bioinform., December, 2023

2022

MINE 2.0: enhanced biochemical coverage for peak identification in untargeted metabolomics.

Jonathan Strutz, Kevin M. Shebek, Linda J. Broadbelt, Keith E. J. Tyo

Bioinform., 2022

2019

Bayesian inference of metabolic kinetics from genome-scale multiomics data.

Peter C. St. John, Jonathan Strutz, Linda J. Broadbelt, Keith E. J. Tyo, Yannick J. Bomble

PLoS Comput. Biol., 2019

Dynamic genome-scale cell-specific metabolic models reveal novel inter-cellular and intra-cellular metabolic communications during ovarian follicle development.

Beatriz Peñalver Bernabé, Ines Thiele, Eugene Galdones, Anaar Siletz, Sriram Chandrasekaran, Teresa K. Woodruff, Linda J. Broadbelt, Lonnie D. Shea

BMC Bioinform., 2019

2018

Application and comparison of derivative-free optimization algorithms to control and optimize free radical polymerization simulated using the kinetic Monte Carlo method.

Hanyu Gao, Andreas Wächter, Ivan A. Konstantinov, Steven G. Arturo, Linda J. Broadbelt

Comput. Chem. Eng., 2018

2015

MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics.

James G. Jeffryes, Ricardo L. Colastani, Mona Elbadawi-Sidhu, Tobias Kind, Thomas D. Niehaus, Linda J. Broadbelt, Andrew D. Hanson, Oliver Fiehn, Keith E. J. Tyo, Christopher S. Henry

J. Cheminformatics, 2015

Efficient searching and annotation of metabolic networks using chemical similarity.

Dante A. Pertusi, Andrew E. Stine, Linda J. Broadbelt, Keith E. J. Tyo

Bioinform., 2015

2011

A Computational Approach To Design and Evaluate Enzymatic Reaction Pathways: Application to 1-Butanol Production from Pyruvate.

Di Wu, Qin Wang, Rajeev S. Assary, Linda J. Broadbelt, Goran Krilov

J. Chem. Inf. Model., 2011

2010

In silico feasibility of novel biodegradation pathways for 1, 2, 4-trichlorobenzene.

Stacey D. Finley, Linda J. Broadbelt, Vassily Hatzimanikatis

BMC Syst. Biol., 2010

2005

Exploring the diversity of complex metabolic networks.

Vassily Hatzimanikatis, Chunhui Li, Justin A. Ionita, Christopher S. Henry, Matthew D. Jankowski, Linda J. Broadbelt

Bioinform., 2005

2003

Encoding of Polycyclic Si-Containing Molecules for Determining Species Uniqueness in Automated Mechanism Generation.

Hsi-Wu Wong, Xuegeng Li, Mark T. Swihart, Linda J. Broadbelt

J. Chem. Inf. Comput. Sci., 2003

Ab Initio Stochastic Optimization of Conformational and Many-Body Degrees of Freedom.

Scott A. McMillan, Ned C. Haubein, Randall Q. Snurr, Linda J. Broadbelt

J. Chem. Inf. Comput. Sci., 2003

Many-Body Optimization Using an Ab Initio Monte Carlo Method.

Ned C. Haubein, Scott A. McMillan, Linda J. Broadbelt

J. Chem. Inf. Comput. Sci., 2003