Vassily Hatzimanikatis

According to our database1, Vassily Hatzimanikatis authored at least 20 papers between 2004 and 2021.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
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Links

Online presence:

On csauthors.net:

Bibliography

2021
The effects of model complexity and size on metabolic flux distribution and control: case study in Escherichia coli.
BMC Bioinform., 2021

2019
Enhanced flux prediction by integrating relative expression and relative metabolite abundance into thermodynamically consistent metabolic models.
PLoS Comput. Biol., 2019

Investigating the deregulation of metabolic tasks via Minimum Network Enrichment Analysis (MiNEA) as applied to nonalcoholic fatty liver disease using mouse and human omics data.
PLoS Comput. Biol., 2019

Uncertainty reduction in biochemical kinetic models: Enforcing desired model properties.
PLoS Comput. Biol., 2019

Statistical inference in ensemble modeling of cellular metabolism.
PLoS Comput. Biol., 2019

Modeling metabolic networks of individual bacterial agents in heterogeneous and dynamic soil habitats (IndiMeSH).
PLoS Comput. Biol., 2019

pyTFA and matTFA: a Python package and a Matlab toolbox for Thermodynamics-based Flux Analysis.
Bioinform., 2019

2017
Bioenergetics-based modeling of Plasmodium falciparum metabolism reveals its essential genes, nutritional requirements, and thermodynamic bottlenecks.
PLoS Comput. Biol., 2017

lumpGEM: Systematic generation of subnetworks and elementally balanced lumped reactions for the biosynthesis of target metabolites.
PLoS Comput. Biol., 2017

redGEM: Systematic reduction and analysis of genome-scale metabolic reconstructions for development of consistent core metabolic models.
PLoS Comput. Biol., 2017

2016
Model-Driven Understanding of Palmitoylation Dynamics: Regulated Acylation of the Endoplasmic Reticulum Chaperone Calnexin.
PLoS Comput. Biol., 2016

2015
Metabolic Needs and Capabilities of <i>Toxoplasma gondii </i> through Combined Computational and Experimental Analysis.
PLoS Comput. Biol., 2015

2013
A Genome-Scale Integration and Analysis of <i>Lactococcus lactis</i> Translation Data.
PLoS Comput. Biol., 2013

2010
The Origins of Time-Delay in Template Biopolymerization Processes.
PLoS Comput. Biol., 2010

In silico feasibility of novel biodegradation pathways for 1, 2, 4-trichlorobenzene.
BMC Syst. Biol., 2010

2007
A model-based optimization framework for the inference of regulatory interactions using time-course DNA microarray expression data.
BMC Bioinform., 2007

2006
DNA Hybridization as a Similarity Criterion for Querying Digital Signals Stored in DNA Databases.
Proceedings of the 2006 IEEE International Conference on Acoustics Speech and Signal Processing, 2006

2005
Preface.
Comput. Chem. Eng., 2005

Exploring the diversity of complex metabolic networks.
Bioinform., 2005

2004
A model-based optimization framework for the inference on gene regulatory networks from DNA array data.
Bioinform., 2004


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