Lisa Tucker-Kellogg

Orcid: 0000-0002-1301-7069

According to our database1, Lisa Tucker-Kellogg authored at least 24 papers between 2002 and 2022.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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In proceedings 
Article 
PhD thesis 
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Bibliography

2022
ArcheGEO: towards improving relevance of gene expression omnibus search results.
Proceedings of the BCB '22: 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, Northbrook, Illinois, USA, August 7, 2022

2021
Computational modeling suggests binding-induced expansion of Epsin disordered regions upon association with AP2.
PLoS Comput. Biol., 2021

2020
Transcompp: understanding phenotypic plasticity by estimating Markov transition rates for cell state transitions.
Bioinform., 2020

De novo Ensemble Modeling Suggests that AP2-Binding to Disordered Regions Can Increase StericVolume of Epsin but Not Eps15.
Proceedings of the Pacific Symposium on Biocomputing 2020, 2020

2017
Computational analysis reveals the coupling between bistability and the sign of a feedback loop in a TGF-β1 activation model.
BMC Syst. Biol., 2017

TINTIN: Exploiting Target Features for Signaling Network Similarity Computation and Ranking.
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

2016
Superpixel-based segmentation of muscle fibers in multi-channel microscopy.
BMC Syst. Biol., 2016

TENET: A Machine Learning-Based System for Target Characterization in Signaling Networks.
Proceedings of the IEEE International Conference on Data Mining Workshops, 2016

TAPESTRY: Network-centric Target Prioritization in Disease-related Signaling Networks.
Proceedings of the 7th ACM International Conference on Bioinformatics, 2016

2015
Non-canonical Activation of Akt in Serum-Stimulated Fibroblasts, Revealed by Comparative Modeling of Pathway Dynamics.
PLoS Comput. Biol., 2015

TENET: topological feature-based target characterization in signalling networks.
Bioinform., 2015

2014
The Self-Limiting Dynamics of TGF-β Signaling <i>In Silico</i> and <i>In Vitro</i>, with Negative Feedback through PPM1A Upregulation.
PLoS Comput. Biol., 2014

One feature doesn't fit all: characterizing topological features of targets in signaling networks.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013
SPEDRE: a web server for estimating rate parameters for cell signaling dynamics in data-rich environments.
Nucleic Acids Res., 2013

Computational modelling of LY303511 and TRAIL-induced apoptosis suggests dynamic regulation of cFLIP.
Bioinform., 2013

Systematic parameter estimation in data-rich environments for cell signalling dynamics.
Bioinform., 2013

2012
In silico identification of endo16 regulators in the sea urchin endomesoderm gene regulatory network.
Proceedings of the ACM International Health Informatics Symposium, 2012

PANI: an interactive data-driven tool for target prioritization in signaling networks.
Proceedings of the ACM International Health Informatics Symposium, 2012

STEROID: in silico heuristic target combination identification for disease-related signaling networks.
Proceedings of the ACM International Conference on Bioinformatics, 2012

2011
Pani: a novel algorithm for fast discovery of putative target nodes in signaling networks.
Proceedings of the ACM International Conference on Bioinformatics, 2011

2010
The Steady States and Dynamics of Urokinase-mediated Plasmin Activation.
Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010

2008
pFlexAna: detecting conformational changes in remotely related proteins.
Nucleic Acids Res., 2008

2007
Composing Globally Consistent Pathway Parameter Estimates Through Belief Propagation.
Proceedings of the Algorithms in Bioinformatics, 7th International Workshop, 2007

2002
Systematic conformational search with constraint satisfaction.
PhD thesis, 2002


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