Lizhen Shi

According to our database, Lizhen Shi authored at least 7 papers between 2015 and 2025.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2025

DNABERT-S: pioneering species differentiation with species-aware DNA embeddings.

Zhihan Zhou, Weimin Wu, Harrison Ho, Jiayi Wang, Lizhen Shi, Ramana V. Davuluri, Zhong Wang, Han Liu

Bioinform., 2025

2024

DNABERT-S: Learning Species-Aware DNA Embedding with Genome Foundation Models.

Zhihan Zhou, Weimin Wu, Harrison Ho, Jiayi Wang, Lizhen Shi, Ramana V. Davuluri, Zhong Wang, Han Liu

CoRR, 2024

2021

LSHvec: a vector representation of DNA sequences using locality sensitive hashing and FastText word embeddings.

Lizhen Shi, Bo Chen

Proceedings of the BCB '21: 12th ACM International Conference on Bioinformatics, 2021

2020

Comparison and Benchmark of Graph Clustering Algorithms.

Lizhen Shi, Bo Chen

CoRR, 2020

2019

SpaRC: scalable sequence clustering using Apache Spark.

Lizhen Shi, Xiandong Meng, Elizabeth Tseng, Michael Mascagni, Zhong Wang

Bioinform., 2019

2017

A case study of tuning MapReduce for efficient Bioinformatics in the cloud.

Lizhen Shi, Zhong Wang, Weikuan Yu, Xiandong Meng

Parallel Comput., 2017

2015

Performance evaluation and tuning of BioPig for genomic analysis.

Lizhen Shi, Zhong Wang, Weikuan Yu, Xiandong Meng

Proceedings of the 2015 International Workshop on Data-Intensive Scalable Computing Systems, 2015