Lydia Freddolino

Orcid: 0000-0002-5821-4226

Affiliations:
  • University of Michigan, Medical School, Ann Arbor, MI, USA
  • University of Illinois at Urbana-Champaign, Beckman Institute, Urbana, IL, USA (PhD 2009)


According to our database1, Lydia Freddolino authored at least 10 papers between 2007 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book  In proceedings  Article  PhD thesis  Dataset  Other 

Links

Online presence:

On csauthors.net:

Bibliography

2024
A large-scale assessment of sequence database search tools for homology-based protein function prediction.
Briefings Bioinform., July, 2024

DEMO-EM2: assembling protein complex structures from cryo-EM maps through intertwined chain and domain fitting.
Briefings Bioinform., March, 2024

InterLabelGO+: unraveling label correlations in protein function prediction.
Bioinform., 2024

2023
VMD as a Platform for Interactive Small Molecule Preparation and Visualization in Quantum and Classical Simulations.
J. Chem. Inf. Model., August, 2023

2022
TripletGO: Integrating Transcript Expression Profiles with Protein Homology Inferences for Gene Function Prediction.
Genom. Proteom. Bioinform., October, 2022

LOMETS3: integrating deep learning and profile alignment for advanced protein template recognition and function annotation.
Nucleic Acids Res., 2022

2020
Detecting Gene Ontology misannotations using taxon-specific rate ratio comparisons.
Bioinform., 2020

2017
COFACTOR: improved protein function prediction by combining structure, sequence and protein-protein interaction information.
Nucleic Acids Res., 2017

2011
Stereochemical errors and their implications to molecular dynamics simulations.
BMC Bioinform., 2011

2007
Accelerating molecular modeling applications with graphics processors.
J. Comput. Chem., 2007


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