Zhiyong Lu
Orcid: 0000-0001-9998-916X
According to our database1,
Zhiyong Lu
authored at least 279 papers
between 2003 and 2024.
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Bibliography
2024
GeneGPT: augmenting large language models with domain tools for improved access to biomedical information.
Bioinform., February, 2024
Int. J. Comput. Assist. Radiol. Surg., January, 2024
Rethinking Scientific Summarization Evaluation: Grounding Explainable Metrics on Facet-aware Benchmark.
CoRR, 2024
AgentMD: Empowering Language Agents for Risk Prediction with Large-Scale Clinical Tool Learning.
CoRR, 2024
CoRR, 2024
Harnessing PubMed User Query Logs for Post Hoc Explanations of Recommended Similar Articles.
CoRR, 2024
Quality of Answers of Generative Large Language Models vs Peer Patients for Interpreting Lab Test Results for Lay Patients: Evaluation Study.
CoRR, 2024
Leveraging Professional Radiologists' Expertise to Enhance LLMs' Evaluation for Radiology Reports.
CoRR, 2024
Unmasking and Quantifying Racial Bias of Large Language Models in Medical Report Generation.
CoRR, 2024
CoRR, 2024
2023
Bioinform., December, 2023
Trigonometric projection statistics histograms for 3D local feature representation and shape description.
Pattern Recognit., November, 2023
J. Biomed. Informatics, October, 2023
BioREx: Improving biomedical relation extraction by leveraging heterogeneous datasets.
J. Biomed. Informatics, October, 2023
Bioinform., October, 2023
MedCPT: Contrastive Pre-trained Transformers with large-scale PubMed search logs for zero-shot biomedical information retrieval.
Bioinform., October, 2023
AIONER: all-in-one scheme-based biomedical named entity recognition using deep learning.
Bioinform., May, 2023
Int. J. Comput. Assist. Radiol. Surg., February, 2023
Comprehensively identifying Long Covid articles with human-in-the-loop machine learning.
Patterns, January, 2023
Nucleic Acids Res., January, 2023
Nucleic Acids Res., January, 2023
CoRR, 2023
Leveraging Generative AI for Clinical Evidence Summarization Needs to Achieve Trustworthiness.
CoRR, 2023
Towards long-tailed, multi-label disease classification from chest X-ray: Overview of the CXR-LT challenge.
CoRR, 2023
PubMed and Beyond: Recent Advances and Best Practices in Biomedical Literature Search.
CoRR, 2023
BioCPT: Contrastive Pre-trained Transformers with Large-scale PubMed Search Logs for Zero-shot Biomedical Information Retrieval.
CoRR, 2023
Opportunities and Challenges for ChatGPT and Large Language Models in Biomedicine and Health.
CoRR, 2023
Large language models in biomedical natural language processing: benchmarks, baselines, and recommendations.
CoRR, 2023
Interpretable Medical Image Visual Question Answering via Multi-Modal Relationship Graph Learning.
CoRR, 2023
CoRR, 2023
Chemical identification and indexing in full-text articles: an overview of the NLM-Chem track at BioCreative VII.
Database J. Biol. Databases Curation, 2023
Proceedings of the 46th International ACM SIGIR Conference on Research and Development in Information Retrieval, 2023
Attention-based 3D convolutional networks for detection of geographic atrophy from optical coherence tomography scans.
Proceedings of the Medical Imaging 2023: Image Processing, 2023
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023
Proceedings of the Medical Imaging 2023: Computer-Aided Diagnosis, 2023
Multi-stage Literature Retrieval System Trained by PubMed Search Logs for Biomedical Question Answering.
Proceedings of the Working Notes of the Conference and Labs of the Evaluation Forum (CLEF 2023), 2023
2022
LitMC-BERT: Transformer-Based Multi-Label Classification of Biomedical Literature With An Application on COVID-19 Literature Curation.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022
Pattern Recognit., 2022
Predicting myocardial infarction through retinal scans and minimal personal information.
Nat. Mach. Intell., 2022
Nucleic Acids Res., 2022
Global-Local attention network with multi-task uncertainty loss for abnormal lymph node detection in MR images.
Medical Image Anal., 2022
PhenoRerank: A re-ranking model for phenotypic concept recognition pre-trained on human phenotype ontology.
J. Biomed. Informatics, 2022
J. Biomed. Informatics, 2022
Comprehensive identification of Long Covid articles with human-in-the-loop machine learning.
CoRR, 2022
Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations.
CoRR, 2022
A Privacy-Preserving Unsupervised Domain Adaptation Framework for Clinical Text Analysis.
CoRR, 2022
Bioinform., 2022
A sequence labeling framework for extracting drug-protein relations from biomedical literature.
Database J. Biol. Databases Curation, 2022
NLM-Chem-BC7: manually annotated full-text resources for chemical entity annotation and indexing in biomedical articles.
Database J. Biol. Databases Curation, 2022
A roadmap for the functional annotation of protein families: a community perspective.
Database J. Biol. Databases Curation, 2022
Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations.
Database J. Biol. Databases Curation, 2022
Assigning species information to corresponding genes by a sequence labeling framework.
Database J. Biol. Databases Curation, 2022
Predicting Age-related Macular Degeneration Progression with Longitudinal Fundus Images Using Deep Learning.
Proceedings of the Machine Learning in Medical Imaging - 13th International Workshop, 2022
Proceedings of the Medical Imaging 2022: Computer-Aided Diagnosis, 2022
Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022
PhenoGene: Disease-gene prioritization using graph embedding on patient phenotypic profiles.
Proceedings of the AMIA 2022, 2022
Proceedings of the AMIA 2022, 2022
Deep learning automated diagnosis and quantitative classification of cataract type and severity: quantifying the effectiveness and usability of deep learning-assisted disease diagnosis models with 14 ophthalmologists and multi-center validations.
Proceedings of the AMIA 2022, 2022
Automated and Accessible Diagnosis of Age-related Macular Degeneration: a Comparative Analysis of the impact of machine learning models in clinical diagnostic Workflows.
Proceedings of the AMIA 2022, 2022
2021
Generalized Zero-Shot Chest X-Ray Diagnosis Through Trait-Guided Multi-View Semantic Embedding With Self-Training.
IEEE Trans. Medical Imaging, 2021
Loss-Based Attention for Interpreting Image-Level Prediction of Convolutional Neural Networks.
IEEE Trans. Image Process., 2021
COVID-19-CT-CXR: A Freely Accessible and Weakly Labeled Chest X-Ray and CT Image Collection on COVID-19 From Biomedical Literature.
IEEE Trans. Big Data, 2021
Nucleic Acids Res., 2021
LitSuggest: a web-based system for literature recommendation and curation using machine learning.
Nucleic Acids Res., 2021
NLM-Gene, a richly annotated gold standard dataset for gene entities that addresses ambiguity and multi-species gene recognition.
J. Biomed. Informatics, 2021
Multimodal, multitask, multiattention (M3) deep learning detection of reticular pseudodrusen: Toward automated and accessible classification of age-related macular degeneration.
J. Am. Medical Informatics Assoc., 2021
PhenoTagger: a hybrid method for phenotype concept recognition using human phenotype ontology.
Bioinform., 2021
Bioinform., 2021
Recent advances of automated methods for searching and extracting genomic variant information from biomedical literature.
Briefings Bioinform., 2021
Learning Structure from Visual Semantic Features and Radiology Ontology for Lymph Node Classification on MRI.
Proceedings of the Machine Learning in Medical Imaging - 12th International Workshop, 2021
Proceedings of the Machine Learning in Medical Imaging - 12th International Workshop, 2021
Learning Few-Shot Chest X-Ray Diagnosis Using Images From The Published Scientific Literature.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021
Research on Deep Neural Network Model Compression Based on Quantification Pruning and Huffmann Encoding.
Proceedings of the Intelligent Computing Theories and Application, 2021
Proceedings of the IEEE/CVF International Conference on Computer Vision Workshops, 2021
Measuring the relative importance of full text sections for information retrieval from scientific literature.
Proceedings of the 20th Workshop on Biomedical Language Processing, 2021
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021
Long Covid: A Comprehensive Collection of Articles Regarding Long-Haul Symptoms in COVID-19 Survivors.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021
NLM-Chem, a Gold-Standard Corpus for Chemical Entity Recognition in PubMed Full Text Literature.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021
Multi-task deep learning-based survival analysis on the prognosis of late AMD using the longitudinal data in AREDS.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021
Deep learning detection of reticular pseudodrusen using multi-modal, multi-task, and multi-attention mechanisms: towards automated and accessible classification of age-related macular degeneration.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021
AM2BERT: attention guided and regularized transformer-based multi-label classification model for COVID-19 literature curation.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021
2020
Deep learning with sentence embeddings pre-trained on biomedical corpora improves the performance of finding similar sentences in electronic medical records.
BMC Medical Informatics Decis. Mak., April, 2020
BioConceptVec: Creating and evaluating literature-based biomedical concept embeddings on a large scale.
PLoS Comput. Biol., 2020
Automated abnormality classification of chest radiographs using deep convolutional neural networks.
npj Digit. Medicine, 2020
npj Digit. Medicine, 2020
Nucleic Acids Res., 2020
J. Am. Medical Informatics Assoc., 2020
Multi-modal, multi-task, multi-attention (M3) deep learning detection of reticular pseudodrusen: towards automated and accessible classification of age-related macular degeneration.
CoRR, 2020
Artificial Intelligence (AI) in Action: Addressing the COVID-19 Pandemic with Natural Language Processing (NLP).
CoRR, 2020
Navigating the landscape of COVID-19 research through literature analysis: A bird's eye view.
CoRR, 2020
Bioinform., 2020
Bioinform., 2020
COMe-SEE: Cross-modality Semantic Embedding Ensemble for Generalized Zero-Shot Diagnosis of Chest Radiographs.
Proceedings of the Interpretable and Annotation-Efficient Learning for Medical Image Computing, 2020
Proceedings of the 1st Workshop on NLP for COVID-19@ EMNLP 2020, Online, December 2020, 2020
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing, 2020
Proceedings of the AMIA 2020, 2020
Proceedings of the 3rd Clinical Natural Language Processing Workshop, 2020
2019
Nucleic Acids Res., 2019
Nucleic Acids Res., 2019
Nucleic Acids Res., 2019
J. Am. Medical Informatics Assoc., 2019
A deep learning approach for automated detection of geographic atrophy from color fundus photographs.
CoRR, 2019
Exploring Semi-supervised Variational Autoencoders for Biomedical Relation Extraction.
CoRR, 2019
Bioinform., 2019
Using deep learning to identify translational research in genomic medicine beyond bench to bedside.
Database J. Biol. Databases Curation, 2019
PubMed Text Similarity Model and its application to curation efforts in the Conserved Domain Database.
Database J. Biol. Databases Curation, 2019
Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine.
Database J. Biol. Databases Curation, 2019
Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019
MULAN: Multitask Universal Lesion Analysis Network for Joint Lesion Detection, Tagging, and Segmentation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019
Fine-Grained Lesion Annotation in CT Images With Knowledge Mined From Radiology Reports.
Proceedings of the 16th IEEE International Symposium on Biomedical Imaging, 2019
A self-attention based deep learning method for lesion attribute detection from CT reports.
Proceedings of the 2019 IEEE International Conference on Healthcare Informatics, 2019
Proceedings of the 2019 IEEE International Conference on Healthcare Informatics, 2019
Holistic and Comprehensive Annotation of Clinically Significant Findings on Diverse CT Images: Learning From Radiology Reports and Label Ontology.
Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2019
Transfer Learning in Biomedical Natural Language Processing: An Evaluation of BERT and ELMo on Ten Benchmarking Datasets.
Proceedings of the 18th BioNLP Workshop and Shared Task, 2019
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019
Proceedings of the 10th ACM International Conference on Bioinformatics, 2019
A deep learning-based survival model for prediction of progression in late Age-related Macular Degeneration (AMD) from color fundus photographs.
Proceedings of the AMIA 2019, 2019
Automatic Classification and Reporting of Multiple Common Thorax Diseases Using Chest Radiographs.
Proceedings of the Deep Learning and Convolutional Neural Networks for Medical Imaging and Clinical Informatics, 2019
ChestX-ray: Hospital-Scale Chest X-ray Database and Benchmarks on Weakly Supervised Classification and Localization of Common Thorax Diseases.
Proceedings of the Deep Learning and Convolutional Neural Networks for Medical Imaging and Clinical Informatics, 2019
2018
Scaling up data curation using deep learning: An application to literature triage in genomic variation resources.
PLoS Comput. Biol., 2018
Nucleic Acids Res., 2018
Nucleic Acids Res., 2018
A multi-task deep learning model for the classification of Age-related Macular Degeneration.
CoRR, 2018
DeepSeeNet: A deep learning model for automated classification of patient-based age-related macular degeneration severity from color fundus photographs.
CoRR, 2018
CoRR, 2018
CoRR, 2018
CoRR, 2018
tmVar 2.0: integrating genomic variant information from literature with dbSNP and ClinVar for precision medicine.
Bioinform., 2018
Generalizing biomedical relation classification with neural adversarial domain adaptation.
Bioinform., 2018
Database J. Biol. Databases Curation, 2018
Extracting chemical-protein relations with ensembles of SVM and deep learning models.
Database J. Biol. Databases Curation, 2018
Database J. Biol. Databases Curation, 2018
Database J. Biol. Databases Curation, 2018
Database J. Biol. Databases Curation, 2018
A Fast Deep Learning Model for Textual Relevance in Biomedical Information Retrieval.
Proceedings of the 2018 World Wide Web Conference on World Wide Web, 2018
Proceedings of the 2018 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, 2018
TieNet: Text-Image Embedding Network for Common Thorax Disease Classification and Reporting in Chest X-Rays.
Proceedings of the 2018 IEEE Conference on Computer Vision and Pattern Recognition, 2018
Proceedings of the BioNLP 2018 workshop, Melbourne, Australia, July 19, 2018, 2018
Proceedings of the BioNLP 2018 workshop, Melbourne, Australia, July 19, 2018, 2018
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018
Proceedings of the AMIA 2018, 2018
Proceedings of the AMIA 2018, 2018
2017
Bridging the gap: Incorporating a semantic similarity measure for effectively mapping PubMed queries to documents.
J. Biomed. Informatics, 2017
NegBio: a high-performance tool for negation and uncertainty detection in radiology reports.
CoRR, 2017
DIGNiFI: Discovering causative genes for orphan diseases using protein-protein interaction networks.
BMC Syst. Biol., 2017
J. Biomed. Semant., 2017
Bioinform., 2017
Exploiting Virtual Metadata Servers to Provide Multi-Level Consistency for Key-Value Object-Based Data Store.
Proceedings of the 2017 International Conference on Networking, Architecture, and Storage, 2017
ChestX-Ray8: Hospital-Scale Chest X-Ray Database and Benchmarks on Weakly-Supervised Classification and Localization of Common Thorax Diseases.
Proceedings of the 2017 IEEE Conference on Computer Vision and Pattern Recognition, 2017
Deep learning for extracting protein-protein interactions from biomedical literature.
Proceedings of the BioNLP 2017, Vancouver, Canada, August 4, 2017, 2017
Deep Learning for Biomedical Information Retrieval: Learning Textual Relevance from Click Logs.
Proceedings of the BioNLP 2017, Vancouver, Canada, August 4, 2017, 2017
BioCreative VI Precision Medicine Track: creating a training corpus for mining protein-protein interactions affected by mutations.
Proceedings of the BioNLP 2017, Vancouver, Canada, August 4, 2017, 2017
Proceedings of the AMIA 2017, 2017
2016
Text Mining Genotype-Phenotype Relationships from Biomedical Literature for Database Curation and Precision Medicine.
PLoS Comput. Biol., 2016
Improving chemical disease relation extraction with rich features and weakly labeled data.
J. Cheminformatics, 2016
Text mining for precision medicine: automating disease-mutation relationship extraction from biomedical literature.
J. Am. Medical Informatics Assoc., 2016
CoRR, 2016
Bioinform., 2016
Bioinform., 2016
Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task.
Database J. Biol. Databases Curation, 2016
Database J. Biol. Databases Curation, 2016
Pressing needs of biomedical text mining in biocuration and beyond: opportunities and challenges.
Database J. Biol. Databases Curation, 2016
Database J. Biol. Databases Curation, 2016
Database J. Biol. Databases Curation, 2016
Discovering biomedical semantic relations in PubMed queries for information retrieval and database curation.
Database J. Biol. Databases Curation, 2016
Briefings Bioinform., 2016
Briefings Bioinform., 2016
Community challenges in biomedical text mining over 10 years: success, failure and the future.
Briefings Bioinform., 2016
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016
Proceedings of the 15th Workshop on Biomedical Natural Language Processing, 2016
Proceedings of the Seventh International Workshop on Health Text Mining and Information Analysis, 2016
2015
SimConcept: A Hybrid Approach for Simplifying Composite Named Entities in Biomedical Text.
IEEE J. Biomed. Health Informatics, 2015
tmChem: a high performance approach for chemical named entity recognition and normalization.
J. Cheminformatics, 2015
J. Cheminformatics, 2015
Challenges in clinical natural language processing for automated disorder normalization.
J. Biomed. Informatics, 2015
Data Sci. J., 2015
BMC Bioinform., 2015
Database J. Biol. Databases Curation, 2015
Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015
Proceedings of the Working Notes of CLEF 2015, 2015
2014
J. Biomed. Informatics, 2014
NCBI disease corpus: A resource for disease name recognition and concept normalization.
J. Biomed. Informatics, 2014
Database J. Biol. Databases Curation, 2014
Database J. Biol. Databases Curation, 2014
Hybrid curation of gene-mutation relations combining automated extraction and crowdsourcing.
Database J. Biol. Databases Curation, 2014
Database J. Biol. Databases Curation, 2014
Proceedings of the Biocomputing 2014: Proceedings of the Pacific Symposium, 2014
NCBI at the 2014 BioASQ Challenge Task: Large-scale Biomedical Semantic Indexing and Question Answering.
Proceedings of the Working Notes for CLEF 2014 Conference, 2014
Proceedings of BioNLP, Baltimore, Maryland, USA, 2014
SimConcept: a hybrid approach for simplifying composite named entities in biomedicine.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014
Proceedings of the 5th ACM Conference on Bioinformatics, 2014
Proceedings of the 5th ACM Conference on Bioinformatics, 2014
Proceedings of the AMIA 2014, 2014
2013
Nucleic Acids Res., 2013
tmVar: a text mining approach for extracting sequence variants in biomedical literature.
Bioinform., 2013
Database J. Biol. Databases Curation, 2013
An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.
Database J. Biol. Databases Curation, 2013
Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013
Proceedings of the IEEE International Conference on Healthcare Informatics, 2013
NCBI at 2013 ShARe/CLEF eHealth Shared Task: Disorder Normalization in Clinical Notes with Dnorm.
Proceedings of the Working Notes for CLEF 2013 Conference , 2013
Proceedings of the AMIA 2013, 2013
Proceedings of the AMIA 2013, 2013
NCBI Disease Corpus: A Valuable Resource for Disease Name Recognition and Normalization.
Proceedings of the AMIA 2013, 2013
2012
Nucleic Acids Res., 2012
BMC Medical Informatics Decis. Mak., 2012
J. Biomed. Informatics, 2012
Accelerating literature curation with text-mining tools: a case study of using PubTator to curate genes in PubMed abstracts.
Database J. Biol. Databases Curation, 2012
Improving links between literature and biological data with text mining: a case study with GEO, PDB and MEDLINE.
Database J. Biol. Databases Curation, 2012
Biocuration workflows and text mining: overview of the BioCreative 2012 Workshop Track II.
Database J. Biol. Databases Curation, 2012
Prioritizing PubMed articles for the Comparative Toxicogenomic Database utilizing semantic information.
Database J. Biol. Databases Curation, 2012
Proceedings of the ACM International Health Informatics Symposium, 2012
Proceedings of the 2012 IEEE Second International Conference on Healthcare Informatics, 2012
Proceedings of the 2012 IEEE Second International Conference on Healthcare Informatics, 2012
Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, 2012
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012
Proceedings of the Information Retrieval and Knowledge Discovery in Biomedical Text, 2012
2011
Nucleic Acids Res., 2011
Semi-automatic semantic annotation of PubMed queries: A study on quality, efficiency, satisfaction.
J. Biomed. Informatics, 2011
J. Am. Medical Informatics Assoc., 2011
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.
BMC Bioinform., 2011
BMC Bioinform., 2011
Extraction of data deposition statements from the literature: a method for automatically tracking research results.
Bioinform., 2011
Database J. Biol. Databases Curation, 2011
Automatic extraction of data deposition statements: where do the research results go?
Proceedings of the 2011 Workshop on Biomedical Natural Language Processing, 2011
2010
Nucleic Acids Res., 2010
J. Am. Medical Informatics Assoc., 2010
Bioinform., 2010
Proceedings of the ACM International Health Informatics Symposium, 2010
A Textual Representation Scheme for Identifying Clinical Relationships in Patient Records.
Proceedings of the Ninth International Conference on Machine Learning and Applications, 2010
2009
J. Biomed. Informatics, 2009
J. Am. Medical Informatics Assoc., 2009
Database J. Biol. Databases Curation, 2009
Summarizing Documents by Measuring the Importance of a Subset of Vertices within a Graph.
Proceedings of the 2009 IEEE/WIC/ACM International Conference on Web Intelligence, 2009
Proceedings of the 2009 Joint International Conference on Digital Libraries, 2009
Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, 2009
Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, 2009
2008
OpenDMAP: An open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression.
BMC Bioinform., 2008
Proceedings of the AMIA 2008, 2008
2007
Proceedings of the Biocomputing 2007, 2007
2006
Concept Recognition, Information Retrieval, and Machine Learning in Genomics Question-Answering.
Proceedings of the Fifteenth Text REtrieval Conference, 2006
Proceedings of the Biocomputing 2006, 2006
Evaluation of Lexical Methods for Detecting Relationships Between Concepts from Multiple Ontologies.
Proceedings of the Biocomputing 2006, 2006
2005
Proceedings of the Biocomputing 2005, 2005
2004
Proteome Analyst: custom predictions with explanations in a web-based tool for high-throughput proteome annotations.
Nucleic Acids Res., 2004
Bioinform., 2004
2003
Proceedings of the Advances in Knowledge Discovery and Data Mining, 2003