Marcus Oswald

According to our database, Marcus Oswald authored at least 34 papers between 1998 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

Linear programming based gene expression model (LPM-GEM) predicts the carbon source for Bacillus subtilis.

Kulwadee Thanamit, Franziska Hörhold, Marcus Oswald, Rainer König

BMC Bioinform., 2022

2020

Reprogramming of macrophages employing gene regulatory and metabolic network models.

Franziska Hörhold, David Eisel, Marcus Oswald, Amol Kolte, Daniela Röll, Wolfram Osen, Stefan B. Eichmüller, Rainer König

PLoS Comput. Biol., 2020

2019

Modelling TERT regulation across 19 different cancer types based on the MIPRIP 2.0 gene regulatory network approach.

Alexandra Poos, Theresa Kordaß, Amol Kolte, Volker Ast, Marcus Oswald, Karsten Rippe, Rainer König

BMC Bioinform., 2019

2014

Characterizing Protein Interactions Employing a Genome-Wide siRNA Cellular Phenotyping Screen.

Apichat Suratanee, Martin H. Schaefer, Matthew J. Betts, Zita Soons, Heiko A. Mannsperger, Nathalie Harder, Marcus Oswald, Markus Gipp, Ellen Ramminger, Guillermo Marcus Martinez, Reinhard Männer, Karl Rohr, Erich E. Wanker, Robert B. Russell, Miguel A. Andrade-Navarro, Roland Eils, Rainer König

PLoS Comput. Biol., 2014

A branch-and-bound algorithm for the coupled task problem.

József Békési, Gábor Galambos, Michael N. Jung, Marcus Oswald, Gerhard Reinelt

Math. Methods Oper. Res., 2014

Network topology-based detection of differential gene regulation and regulatory switches in cell metabolism and signaling.

Rosario M. Piro, Stefan Wiesberg, Gunnar Schramm, Nico Rebel, Marcus Oswald, Roland Eils, Gerhard Reinelt, Rainer König

BMC Syst. Biol., 2014

Estimating the activity of transcription factors by the effect on their target genes.

Theresa Schacht, Marcus Oswald, Roland Eils, Stefan B. Eichmüller, Rainer König

Bioinform., 2014

2012

New results on the Windy Postman Problem.

Angel Corberán, Marcus Oswald, Isaac Plana, Gerhard Reinelt, José M. Sanchis

Math. Program., 2012

Exact solution of the 2-dimensional grid arrangement problem.

Marcus Oswald, Gerhard Reinelt, Stefan Wiesberg

Discret. Optim., 2012

2011

Optimal linear arrangements using betweenness variables.

Alberto Caprara, Marcus Oswald, Gerhard Reinelt, Robert Schwarz, Emiliano Traversi

Math. Program. Comput., 2011

A Branch and Cut solver for the maximum stable set problem.

Steffen Rebennack, Marcus Oswald, Dirk Oliver Theis, Hanna Seitz, Gerhard Reinelt, Panos M. Pardalos

J. Comb. Optim., 2011

2010

Speeding up IP-based algorithms for constrained quadratic 0-1 optimization.

Christoph Buchheim, Frauke Liers, Marcus Oswald

Math. Program., 2010

PathWave: discovering patterns of differentially regulated enzymes in metabolic pathways.

Gunnar Schramm, Stefan Wiesberg, Nicolle Diessl, Anna-Lena Kranz, Vitalia Sagulenko, Marcus Oswald, Gerhard Reinelt, Frank Westermann, Roland Eils, Rainer König

Bioinform., 2010

2009

The simultaneous consecutive ones problem.

Marcus Oswald, Gerhard Reinelt

Theor. Comput. Sci., 2009

Improved analysis of an algorithm for the coupled task problem with UET jobs.

József Békési, Gábor Galambos, Marcus Oswald, Gerhard Reinelt

Oper. Res. Lett., 2009

Analyzing the regulation of metabolic pathways in human breast cancer.

Eva-Maria Surmann, Gunnar Schramm, Stefan Wiesberg, Marcus Oswald, Gerhard Reinelt, Roland Eils, Rainer König

Proceedings of the LWA 2009: Workshop-Woche: Lernen, 2009

2008

Local cuts revisited.

Christoph Buchheim, Frauke Liers, Marcus Oswald

Oper. Res. Lett., 2008

Machine learning based analyses on metabolic networks supports high-throughput knockout screens.

Kitiporn Plaimas, Jan-Phillip Mallm, Marcus Oswald, Fabian Svara, Victor Sourjik, Roland Eils, Rainer König

BMC Syst. Biol., 2008

A Basic Toolbox for Constrained Quadratic 0/1 Optimization.

Christoph Buchheim, Frauke Liers, Marcus Oswald

Proceedings of the Experimental Algorithms, 7th International Workshop, 2008

2007

On the graphical relaxation of the symmetric traveling salesman polytope.

Marcus Oswald, Gerhard Reinelt, Dirk Oliver Theis

Math. Program., 2007

Compression of Digital Road Networks.

Jonghyun Suh, Sungwon Jung, Martin Pfeifle, Khoa T. Vo, Marcus Oswald, Gerhard Reinelt

Proceedings of the Advances in Spatial and Temporal Databases, 2007

Optimizing in Graphs with Expensive Computation of Edge Weights.

Frank Noé, Marcus Oswald, Gerhard Reinelt

Proceedings of the Operations Research, 2007

Integrating Genomic and Transcriptomic Data into Graph Based Approaches for Defining Essential Reactions in the Metabolic Network of Escherichia Coli.

Kitiporn Plaimas, Marcus Oswald, Roland Eils, Rainer König

Proceedings of the LWA 2007: Lernen - Wissen, 2007

2006

Computing Best Transition Pathways in High-Dimensional Dynamical Systems: Application to the <i>Alpha_L</i> \leftrightharpoons <i>Beta</i> \leftrightharpoons <i>Alpha_R</i> Transitions in Octaalanine.

Frank Noé, Marcus Oswald, Gerhard Reinelt, Stefan Fischer, Jeremy C. Smith

Multiscale Model. Simul., 2006

Discovering functional gene expression patterns in the metabolic network of <i>Escherichia coli </i>with wavelets transforms.

Rainer König, Gunnar Schramm, Marcus Oswald, Hanna Seitz, Sebastian Sager, Marc Zapatka, Gerhard Reinelt, Roland Eils

BMC Bioinform., 2006

Pattern recognition of gene expression data on biochemical networks with simple wavelet transforms.

Gunnar Schramm, Marcus Oswald, Hanna Seitz, Sebastian Sager, Marc Zapatka, Gerhard Reinelt, Roland Eils, Rainer König

Proceedings of the LWA 2006: Lernen - Wissensentdeckung - Adaptivität, Hildesheim, Deutschland, October 9th-11th 2006, joint workshop event of several interest groups of the German Society for Informatics (GI) - 14th Workshop on Adaptivity and User Modeling in Interactive Systems (ABIS 2006) - Workshop Information Retrieval 2006 of the Special Interest Group Information Retrieval (FGIR 2006) - Workshop on Knowledge and Experience Management (FGWM 2006), 2006

2005

Not Every GTSP Facet Induces an STSP Facet.

Marcus Oswald, Gerhard Reinelt, Dirk Oliver Theis

Proceedings of the Integer Programming and Combinatorial Optimization, 2005

2004

An exact algorithm for scheduling identical coupled tasks.

Dino Ahr, József Békési, Gábor Galambos, Marcus Oswald, Gerhard Reinelt

Math. Methods Oper. Res., 2004

Computing Optimal Consecutive Ones Matrices.

Marcus Oswald, Gerhard Reinelt

Proceedings of the Sharpest Cut, 2004

2003

Weighted Consecutive Ones Problems

Marcus Oswald

PhD thesis, 2003

The weighted consecutive ones problem for a fixed number of rows or columns.

Marcus Oswald, Gerhard Reinelt

Oper. Res. Lett., 2003

2001

Constructing New Facets of the Consecutive Ones Polytope.

Marcus Oswald, Gerhard Reinelt

Proceedings of the Combinatorial Optimization, 2001

2000

Polyhedral Aspects of the Consecutive Ones Problem.

Marcus Oswald, Gerhard Reinelt

Proceedings of the Computing and Combinatorics, 6th Annual International Conference, 2000

1998

Consecutive Ones and a Betweenness Problem in Computational Biology.

Thomas Christof, Marcus Oswald, Gerhard Reinelt

Proceedings of the Integer Programming and Combinatorial Optimization, 1998