Marina Sirota

According to our database, Marina Sirota authored at least 16 papers between 2009 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

Target-agnostic drug prediction integrated with medical record analysis uncovers differential associations of statins with increased survival in COVID-19 patients.

Megan M. Sperry, Tomiko Oskotsky, Ivana Maric, Shruti Kaushal, Takako Takeda, Viktor Horvath, Rani K. Powers, Melissa Rodas, Brooke Furlong, Mercy Soong, Pranav Prabhala, Girija Goyal, Kenneth E. Carlson, Ronald J. Wong, Idit Kosti, Brian L. Le, James Logue, Holly Hammond, Matthew Frieman, David K. Stevenson, Donald E. Ingber, Marina Sirota, Richard Novák

PLoS Comput. Biol., 2023

2022

Nurturing diversity and inclusion in AI in Biomedicine through a virtual summer program for high school students.

Tomiko Oskotsky, Ruchika Bajaj, Jillian Burchard, Taylor Cavazos, Ina Chen, William T. Connell, Stephanie Eaneff, Tianna Grant, Ishan Kanungo, Karla Lindquist, Douglas Myers-Turnbull, Zun Zar Chi Naing, Alice Tang, Bianca Vora, Jon Wang, Isha Karim, Claire Swadling, Janice Yang, AI4ALL Student Cohort, Bill Lindstaedt, Marina Sirota

PLoS Comput. Biol., 2022

2021

dittoSeq: universal user-friendly single-cell and bulk RNA sequencing visualization toolkit.

Daniel G. Bunis, Jared M. Andrews, Gabriela K. Fragiadakis, Trevor D. Burt, Marina Sirota

Bioinform., 2021

2020

Protected Health Information filter (Philter): accurately and securely de-identifying free-text clinical notes.

Beau Norgeot, Kathleen Muenzen, Thomas A. Peterson, Xuancheng Fan, Benjamin S. Glicksberg, Gundolf Schenk, Eugenia Rutenberg, Boris Oskotsky, Marina Sirota, Jinoos Yazdany, Gabriela Schmajuk, Dana Ludwig, Theodore C. Goldstein, Atul J. Butte

npj Digit. Medicine, 2020

Applications of Machine Learning to In Silico Quantification of Chemicals without Analytical Standards.

Dimitri Panagopoulos Abrahamsson, June-Soo Park, Randolph R. Singh, Marina Sirota, Tracey J. Woodruff

J. Chem. Inf. Model., 2020

2019

Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy.

Mohammad Sajjad Ghaemi, Daniel B. DiGiulio, Kévin Contrepois, Benjamin J. Callahan, Thuy T. M. Ngo, Brittany Lee-McMullen, Benoit Lehallier, Anna Robaczewska, David Mcilwain, Yael Rosenberg-Hasson, Ronald J. Wong, Cecele Quaintance, Anthony Culos, Natalie Stanley, Athena Tanada, Amy Tsai, Dyani Gaudilliere, Edward Ganio, Xiaoyuan Han, Kazuo Ando, Leslie McNeil, Martha Tingle, Paul H. Wise, Ivana Maric, Marina Sirota, Tony Wyss-Coray, Virginia D. Winn, Maurice L. Druzin, Ronald Gibbs, Gary L. Darmstadt, David B. Lewis, Vahid Partovi Nia, Bruno Agard, Robert Tibshirani, Garry P. Nolan, Michael P. Snyder, David A. Relman, Stephen R. Quake, Gary M. Shaw, David K. Stevenson, Martin S. Angst, Brice Gaudilliere, Nima Aghaeepour

Bioinform., 2019

2017

Synergistic drug combinations from electronic health records and gene expression.

Yen S. Low, Aaron C. Daugherty, Elizabeth A. Schroeder, William Chen, Tina Seto, Susan C. Weber, Michael Lim, Trevor Hastie, Maya Mathur, Manisha Desai, Carl Farrington, Andrew A. Radin, Marina Sirota, Pragati Kenkare, Caroline A. Thompson, Peter P. Yu, Scarlett L. Gomez, George W. Sledge, Allison W. Kurian, Nigam H. Shah

J. Am. Medical Informatics Assoc., 2017

Ethnic and gender disparity in organ transplant clinical trials and electronic health records.

Jieming Chen, Sanchita Bhattacharya, Marina Sirota, Minnie M. Sarwal, Atul J. Butte

Proceedings of the Summit on Clinical Research Informatics, 2017

2016

Constraints on Biological Mechanism from Disease Comorbidity Using Electronic Medical Records and Database of Genetic Variants.

Steven C. Bagley, Marina Sirota, Richard O. Chen, Atul J. Butte, Russ B. Altman

PLoS Comput. Biol., 2016

2015

Fighting disease with data.

Marina Sirota, Bin Chen

XRDS, 2015

Characteristics of Drug Combination Therapy in Oncology by Analyzing Clinical Trial Data on Clinicaltrials.Gov.

Menghua Wu, Marina Sirota, Atul J. Butte, Bin Chen

Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015

A Systematic Assessment of Linking Gene Expression with Genetic Variants for Prioritizing Candidate Targets.

Hua Fan-Minogue, Bin Chen, Weronika Sikora-Wohlfeld, Marina Sirota, Atul J. Butte

Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015

Human Computation of Big Data in Biomedicine: Making STAR annotations for large scale functional characterization of disease.

Dexter Hadley, James Pan, Osama M. El-Sayed, Jihad Al-Jabban, Imad Al-Jabban, Tej Azad, Shuaib Raza, Mohamed Hadied, Bin Chen, Hyojung Paik, Sanchita Bhattacharya, Marina Sirota, Atul J. Butte

Proceedings of the AMIA 2015, 2015

2012

Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges.

Purvesh Khatri, Marina Sirota, Atul J. Butte

PLoS Comput. Biol., 2012

2010

Identifying a High Fraction of the Human Genome to be under Selective Constraint Using GERP++.

Eugene Davydov, David L. Goode, Marina Sirota, Gregory M. Cooper, Arend Sidow, Serafim Batzoglou

PLoS Comput. Biol., 2010

2009

A Classifier-based approach to identify genetic similarities between diseases.

Marc A. Schaub, Irene M. Kaplow, Marina Sirota, Chuong B. Do, Atul J. Butte, Serafim Batzoglou

Bioinform., 2009