Arend Sidow

According to our database, Arend Sidow authored at least 10 papers between 2004 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2021

De novo mutational signature discovery in tumor genomes using SparseSignatures.

Avantika Lal, Keli Liu, Robert Tibshirani, Arend Sidow, Daniele Ramazzotti

PLoS Comput. Biol., 2021

2015

svviz: a read viewer for validating structural variants.

Noah Spies, Justin M. Zook, Marc Salit, Arend Sidow

Bioinform., 2015

Read Clouds Uncover Variation in Complex Regions of the Human Genome.

Alex Bishara, Yuling Liu, Dorna Kashef Haghighi, Ziming Weng, Daniel E. Newburger, Robert B. West, Arend Sidow, Serafim Batzoglou

Proceedings of the Research in Computational Molecular Biology, 2015

2013

Clustering reveals ubiquitous heterogeneity and asymmetry of genomic signals at functional elements.

Anshul Kundaje, Sofia Kyriazopoulou-Panagiotopoulou, Max W. Libbrecht, Cheryl L. Smith, Debasish Raha, Elliott E. Winters, Steven M. Johnson, Michael P. Snyder, Serafim Batzoglou, Arend Sidow

Tiny Trans. Comput. Sci., 2013

Inference of Tumor Phylogenies with Improved Somatic Mutation Discovery.

Raheleh Salari, Syed Shayon Saleh, Dorna Kashef Haghighi, David Khavari, Daniel E. Newburger, Robert B. West, Arend Sidow, Serafim Batzoglou

J. Comput. Biol., 2013

2010

Identifying a High Fraction of the Human Genome to be under Selective Constraint Using GERP++.

Eugene Davydov, David L. Goode, Marina Sirota, Gregory M. Cooper, Arend Sidow, Serafim Batzoglou

PLoS Comput. Biol., 2010

2009

SHRiMP: Accurate Mapping of Short Color-space Reads.

Stephen M. Rumble, Phil Lacroute, Adrian V. Dalca, Marc Fiume, Arend Sidow, Michael Brudno

PLoS Comput. Biol., 2009

2007

Constructing a meaningful evolutionary average at the phylogenetic center of mass.

Eric A. Stone, Arend Sidow

BMC Bioinform., 2007

2004

ABC: software for interactive browsing of genomic multiple sequence alignment data.

Gregory M. Cooper, Senthil A. G. Singaravelu, Arend Sidow

BMC Bioinform., 2004

Chaining Algorithms for Alignment of Draft Sequence.

Mukund Sundararajan, Michael Brudno, Kerrin S. Small, Arend Sidow, Serafim Batzoglou

Proceedings of the Algorithms in Bioinformatics, 4th International Workshop, 2004