Martin Maska

Orcid: 0000-0003-3544-6494

According to our database1, Martin Maska authored at least 30 papers between 2007 and 2023.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

Legend:

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PhD thesis 
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Bibliography

2023
Segmentation and Tracking of Mammary Epithelial Organoids in Brightfield Microscopy.
IEEE Trans. Medical Imaging, 2023

2022
Datasets used in "3-D quantification of filopodia in motile cancer cells" IEEE Transactions on Medical Imaging 38(3), 862-872 (2019).
Dataset, May, 2022

2020
BIAFLOWS: A Collaborative Framework to Reproducibly Deploy and Benchmark Bioimage Analysis Workflows.
Patterns, 2020

2019
3-D Quantification of Filopodia in Motile Cancer Cells.
IEEE Trans. Medical Imaging, 2019

CytoPacq: a web-interface for simulating multi-dimensional cell imaging.
Bioinform., 2019

Toward Robust Fully 3D Filopodium Segmentation and Tracking in Time-Lapse Fluorescence Microscopy.
Proceedings of the 2019 IEEE International Conference on Image Processing, 2019

2018
FiloGen: A Model-Based Generator of Synthetic 3-D Time-Lapse Sequences of Single Motile Cells With Growing and Branching Filopodia.
IEEE Trans. Medical Imaging, 2018

Model-Based Generation of Synthetic 3D Time-Lapse Sequences of Multiple Mutually Interacting Motile Cells with Filopodia.
Proceedings of the Simulation and Synthesis in Medical Imaging, 2018

Segmentation of actin-stained 3D fluorescent cells with filopodial protrusions using convolutional neural networks.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Automatic Fusion of Segmentation and Tracking Labels.
Proceedings of the Computer Vision - ECCV 2018 Workshops, 2018

2017
Model-based generation of synthetic 3D time-lapse sequences of motile cells with growing filopodia.
Proceedings of the 14th IEEE International Symposium on Biomedical Imaging, 2017

Particle Tracking Accuracy Measurement Based on Comparison of Linear Oriented Forests.
Proceedings of the 2017 IEEE International Conference on Computer Vision Workshops, 2017

2016
Automatic Detection and Segmentation of Exosomes in Transmission Electron Microscopy.
Proceedings of the Computer Vision - ECCV 2016 Workshops, 2016

2015
Quantification of the 3D collagen network geometry in confocal reflection microscopy.
Proceedings of the 2015 IEEE International Conference on Image Processing, 2015

Characterization of the role of collagen network structure and composition in cancer cell migration.
Proceedings of the 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2015

2014
A benchmark for comparison of cell tracking algorithms.
Bioinform., 2014

On proper simulation of phenomena influencing image formation in fluorescence microscopy.
Proceedings of the 2014 IEEE International Conference on Image Processing, 2014

2013
Segmentation and Shape Tracking of Whole Fluorescent Cells Based on the Chan-Vese Model.
IEEE Trans. Medical Imaging, 2013

Automatic quantification of filopodia-based cell migration.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

2012
Smooth Chan-Vese segmentation via graph cuts.
Pattern Recognit. Lett., 2012

Fast tracking of fluorescent cells based on the Chan-Vese model.
Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

2010
Simultaneous Tracking of Multiple Objects Using Fast Level Set-Like Algorithm.
Proceedings of the Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science, 2010

A Simple Topology Preserving Max-Flow Algorithm for Graph Cut Based Image Segmentation.
Proceedings of the Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science, 2010

A Fast Level Set-Like Algorithm for Region-Based Active Contours.
Proceedings of the Advances in Visual Computing - 6th International Symposium, 2010

2009
A Two-Phase Segmentation of Cell Nuclei Using Fast Level Set-Like Algorithms.
Proceedings of the Image Analysis, 16th Scandinavian Conference, 2009

Segmentation of Touching Cell Nuclei Using a Two-Stage Graph Cut Model.
Proceedings of the Image Analysis, 16th Scandinavian Conference, 2009

Acquiarium: Free Software for the Acquisition and Analysis of 3D Images of Cells in Fluorescence Microscopy.
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

A Fast Level Set-Like Algorithm with Topology Preserving Constraint.
Proceedings of the Computer Analysis of Images and Patterns, 13th International Conference, 2009

2007
A Comparison of Fast Level Set-Like Algorithms for Image Segmentation in Fluorescence Microscopy.
Proceedings of the Advances in Visual Computing, Third International Symposium, 2007

On Simulating 3D Fluorescent Microscope Images.
Proceedings of the Computer Analysis of Images and Patterns, 12th International Conference, 2007


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