Martin Weigt

According to our database, Martin Weigt authored at least 31 papers between 1999 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

Combining phylogeny and coevolution improves the inference of interaction partners among paralogous proteins.

Carlos A. Gandarilla-Pérez, Sergio Pinilla, Anne-Florence Bitbol, Martin Weigt

PLoS Comput. Biol., March, 2023

Machine-learning-assisted Monte Carlo fails at sampling computationally hard problems.

Simone Ciarella, Jeanne Trinquier, Martin Weigt, Francesco Zamponi

Mach. Learn. Sci. Technol., March, 2023

2021

On the effect of phylogenetic correlations in coevolution-based contact prediction in proteins.

Edwin Rodriguez Horta, Martin Weigt

PLoS Comput. Biol., 2021

adabmDCA: adaptive Boltzmann machine learning for biological sequences.

Anna Paola Muntoni, Andrea Pagnani, Martin Weigt, Francesco Zamponi

BMC Bioinform., 2021

2020

Predicting Interacting Protein Pairs by Coevolutionary Paralog Matching.

Thomas Gueudré, Carlo Baldassi, Andrea Pagnani, Martin Weigt

Proceedings of the Protein-Protein Interaction Networks, Methods and Protocols., 2020

FilterDCA: Interpretable supervised contact prediction using inter-domain coevolution.

Maureen Muscat, Giancarlo Croce, Edoardo Sarti, Martin Weigt

PLoS Comput. Biol., 2020

Sparse generative modeling of protein-sequence families.

Pierre Barrat-Charlaix, Anna Paola Muntoni, Kai Shimagaki, Martin Weigt, Francesco Zamponi

CoRR, 2020

2019

Phylogenetic correlations can suffice to infer protein partners from sequences.

Guillaume Marmier, Martin Weigt, Anne-Florence Bitbol

PLoS Comput. Biol., 2019

A multi-scale coevolutionary approach to predict interactions between protein domains.

Giancarlo Croce, Thomas Gueudré, Maria Ruiz-Cuevas, Victoria Keidel, Matteo Figliuzzi, Hendrik Szurmant, Martin Weigt

PLoS Comput. Biol., 2019

Toward Inferring Potts Models for Phylogenetically Correlated Sequence Data.

Edwin Rodriguez Horta, Pierre Barrat-Charlaix, Martin Weigt

Entropy, 2019

2018

Meet-U: Educating through research immersion.

Nika Abdollahi, Alexandre Albani, Éric Anthony, Agnes Baud, Mélissa Cardon, Robert Clerc, Dariusz Czernecki, Romain Conte, Laurent David, Agathe Delaune, Samia Djerroud, Pauline Fourgoux, Nadège Guiglielmoni, Jeanne Laurentie, Nathalie Lehmann, Camille Lochard, Rémi Montagne, Vasiliki Myrodia, Vaitea Opuu, Elise Parey, Lélia Polit, Sylvain Privé, Chloé Quignot, Maria Ruiz-Cuevas, Mariam Sissoko, Nicolas Sompairac, Audrey Vallerix, Violaine Verrecchia, Marc Delarue, Raphaël Guérois, Yann Ponty, Sophie Sacquin-Mora, Alessandra Carbone, Christine Froidevaux, Stéphane Le Crom, Olivier Lespinet, Martin Weigt, Samer Abboud, Juliana S. Bernardes, Guillaume Bouvier, Chloé Dequeker, Arnaud Ferré, Patrick Fuchs, Gaëlle Lelandais, Pierre Poulain, Hugues Richard, Hugo Schweke, Elodie Laine, Anne Lopes

PLoS Comput. Biol., 2018

2013

Perturbation Biology: Inferring Signaling Networks in Cellular Systems.

Evan J. Molinelli, Anil Korkut, Weiqing Wang, Martin L. Miller, Nicholas Paul Gauthier, Xiaohong Jing, Poorvi Kaushik, Qin He, Gordon Mills, David B. Solit, Christine A. Pratilas, Martin Weigt, Alfredo Braunstein, Andrea Pagnani, Riccardo Zecchina, Chris Sander

PLoS Comput. Biol., 2013

From Principal Component to Direct Coupling Analysis of Coevolution in Proteins: Low-Eigenvalue Modes are Needed for Structure Prediction.

Simona Cocco, Rémi Monasson, Martin Weigt

PLoS Comput. Biol., 2013

2010

Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach.

Marc Bailly-Bechet, Alfredo Braunstein, Andrea Pagnani, Martin Weigt, Riccardo Zecchina

BMC Bioinform., 2010

2009

Aligning graphs and finding substructures by message passing

S. Bradde, Alfredo Braunstein, H. Mahmoudi, F. Tria, Martin Weigt, Riccardo Zecchina

CoRR, 2009

The importance of dilution in the inference of biological networks.

Alejandro Lage-Castellanos, Andrea Pagnani, Martin Weigt

Proceedings of the 47th Annual Allerton Conference on Communication, 2009

2007

Clustering by soft-constraint affinity propagation: applications to gene-expression data.

Michele Leone, Sumedha, Martin Weigt

Bioinform., 2007

2006

Message passing for vertex covers

Martin Weigt, Haijun Zhou

CoRR, 2006

Constraint Satisfaction by Survey Propagation.

Alfredo Braunstein, Marc Mézard, Martin Weigt, Riccardo Zecchina

Proceedings of the Computational Complexity and Statistical Physics., 2006

2005

Phase transition and finite-size scaling in the vertex-cover problem.

Alexander K. Hartmann, Wolfgang Barthel, Martin Weigt

Comput. Phys. Commun., 2005

2004

Threshold values, stability analysis and high-q asymptotics for the coloring problem on random graphs

Florent Krzakala, Andrea Pagnani, Martin Weigt

CoRR, 2004

2003

Solving satisfiability problems by fluctuations: The dynamics of stochastic local search algorithms

Wolfgang Barthel, Alexander K. Hartmann, Martin Weigt

CoRR, 2003

2002

Constraint Satisfaction by Survey Propagation

Alfredo Braunstein, Marc Mézard, Martin Weigt, Riccardo Zecchina

CoRR, 2002

Coloring random graphs

Roberto Mulet, Andrea Pagnani, Martin Weigt, Riccardo Zecchina

CoRR, 2002

Computational complexity arising from degree correlations in networks

Alexei Vázquez, Martin Weigt

CoRR, 2002

2001

Statistical mechanics perspective on the phase transition in vertex covering of finite-connectivity random graphs.

Alexander K. Hartmann, Martin Weigt

Theor. Comput. Sci., 2001

Hiding solutions in random satisfiability problems: A statistical mechanics approach

Wolfgang Barthel, Alexander K. Hartmann, Michele Leone, Federico Ricci-Tersenghi, Martin Weigt, Riccardo Zecchina

CoRR, 2001

2000

Simplest random K-satisfiability problem

Federico Ricci-Tersenghi, Martin Weigt, Riccardo Zecchina

CoRR, 2000

Typical solution time for a vertex-covering algorithm on finite-connectivity random graphs

Martin Weigt, Alexander K. Hartmann

CoRR, 2000

The number of guards needed by a museum: A phase transition in vertex covering of random graphs

Martin Weigt, Alexander K. Hartmann

CoRR, 2000

1999

A variational description of the ground state structure in random satisfiability problems

Giulio Biroli, Rémi Monasson, Martin Weigt

CoRR, 1999