Alessandra Carbone
Orcid: 0000-0003-2098-5743Affiliations:
- Sorbonne University, Paris, France
According to our database1,
Alessandra Carbone
authored at least 53 papers
between 1989 and 2023.
Collaborative distances:
Collaborative distances:
Timeline
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Online presence:
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on zbmath.org
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on orcid.org
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on id.loc.gov
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on ihes.fr
On csauthors.net:
Bibliography
2023
CoRR, 2023
Deep Local Analysis deconstructs protein-protein interfaces and accurately estimates binding affinity changes upon mutation.
Bioinform., 2023
2022
PLoS Comput. Biol., November, 2022
From complete cross-docking to partners identification and binding sites predictions.
PLoS Comput. Biol., 2022
iBIS2Analyzer: a web server for a phylogeny-driven coevolution analysis of protein families.
Nucleic Acids Res., 2022
Deep Local Analysis evaluates protein docking conformations with locally oriented cubes.
Bioinform., 2022
2021
PLoS Comput. Biol., 2021
MyCLADE: a multi-source domain annotation server for sequence functional exploration.
Nucleic Acids Res., 2021
2020
Multiple protein-DNA interfaces unravelled by evolutionary information, physico-chemical and geometrical properties.
PLoS Comput. Biol., 2020
Nucleic Acids Res., 2020
BMC Bioinform., 2020
Targeted domain assembly for fast functional profiling of metagenomic datasets with S3A.
Bioinform., 2020
2018
Protein-protein interaction specificity is captured by contact preferences and interface composition.
Bioinform., 2018
2017
J. Chem. Inf. Model., November, 2017
JET2 Viewer: a database of predicted multiple, possibly overlapping, protein-protein interaction sites for PDB structures.
Nucleic Acids Res., 2017
Nucleic Acids Res., 2017
2016
Improvement in Protein Domain Identification Is Reached by Breaking Consensus, with the Agreement of Many Profiles and Domain Co-occurrence.
PLoS Comput. Biol., 2016
Dissecting protein architecture with communication blocks and communicating segment pairs.
BMC Bioinform., 2016
A multi-objective optimization approach accurately resolves protein domain architectures.
Bioinform., 2016
2015
Local Geometry and Evolutionary Conservation of Protein Surfaces Reveal the Multiple Recognition Patches in Protein-Protein Interactions.
PLoS Comput. Biol., 2015
2014
Proceedings of the Discrete and Topological Models in Molecular Biology, 2014
SPoRE: a mathematical model to predict double strand breaks and axis protein sites in meiosis.
BMC Bioinform., 2014
2013
Protein-Protein Interactions in a Crowded Environment: An Analysis via Cross-Docking Simulations and Evolutionary Information.
PLoS Comput. Biol., 2013
Combinatorics of chromosomal rearrangements based on synteny blocks and synteny packs.
J. Log. Comput., 2013
Identification of Protein Interaction Partners from Shape Complementarity Molecular Cross-Docking.
Proceedings of the New Trends in Image Analysis and Processing - ICIAP 2013, 2013
2012
CLAG: an unsupervised non hierarchical clustering algorithm handling biological data.
BMC Bioinform., 2012
2011
Theor. Comput. Sci., 2011
A discriminative method for family-based protein remote homology detection that combines inductive logic programming and propositional models.
BMC Bioinform., 2011
2010
A new mapping between combinatorial proofs and sequent calculus proofs read out from logical flow graphs.
Inf. Comput., 2010
MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data.
Bioinform., 2010
2009
Joint Evolutionary Trees: A Large-Scale Method To Predict Protein Interfaces Based on Sequence Sampling.
PLoS Comput. Biol., 2009
A Combinatorial Approach to Detect Coevolved Amino Acid Networks in Protein Families of Variable Divergence.
PLoS Comput. Biol., 2009
Proceedings of the Algorithmic Bioprocesses, 2009
2007
2006
2004
Proceedings of the Aspects of Molecular Computing, 2004
2003
Theor. Comput. Sci., 2003
Nat. Comput., 2003
2002
2000
Stud Logica, 2000
1999
Ann. Pure Appl. Log., 1999
1997
Ann. Pure Appl. Log., 1997
1991
Notre Dame J. Formal Log., 1991
1990
1989