Matej Lexa
Orcid: 0000-0002-4213-5259
According to our database1,
Matej Lexa
authored at least 26 papers
between 2001 and 2022.
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Bibliography
2022
HiC-TE: a computational pipeline for Hi-C data analysis to study the role of repeat family interactions in the genome 3D organization.
Bioinform., 2022
2021
SARS-CoV-2 hot-spot mutations are significantly enriched within inverted repeats and CpG island loci.
Briefings Bioinform., 2021
2020
TE-greedy-nester: structure-based detection of LTR retrotransposons and their nesting.
Bioinform., 2020
Bioinform., 2020
2018
TE-nester: a recursive software tool for structure-based discovery of nested transposable elements.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018
2017
pqsfinder: an exhaustive and imperfection-tolerant search tool for potential quadruplex-forming sequences in R.
Bioinform., 2017
2016
Hammock: a hidden Markov model-based peptide clustering algorithm to identify protein-interaction consensus motifs in large datasets.
Bioinform., 2016
Semi-automatic mining of correlated data from a complex database: Correlation network visualization.
Proceedings of the 6th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2016
2015
A Flexible Denormalization Technique for Data Analysis above a Deeply-Structured Relational Database: Biomedical Applications.
Proceedings of the Bioinformatics and Biomedical Engineering, 2015
2014
The Possibilities of Filtering Pairs of SNPs in GWAS Studies - Exploratory Study on Public Protein-interaction and Pathway Data.
Proceedings of the BIOINFORMATICS 2014, 2014
Uneven Distribution of Potential Triplex Sequences in the Human Genome - In Silico Study using the R/Bioconductor Package Triplex.
Proceedings of the BIOINFORMATICS 2014, 2014
2013
Triplex: an R/Bioconductor package for identification and visualization of potential intramolecular triplex patterns in DNA sequences.
Bioinform., 2013
2012
Prediction of Significant Cruciform Structures from Sequence in Topologically Constrained DNA - A Probabilistic Modelling Approach.
Proceedings of the BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1, 2012
cswHMM: A Novel Context Switching Hidden Markov Model for Biological Sequence Analysis.
Proceedings of the BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1, 2012
2011
Bioinform., 2011
Proceedings of the 22nd IEEE International Conference on Application-specific Systems, 2011
2010
Clustering of Protein Substructures for Discovery of a Novel Class of Sequence-Structure Fragments.
Proceedings of the Information Technology in Bio- and Medical Informatics, 2010
Proceedings of the 18th IEEE Annual International Symposium on Field-Programmable Custom Computing Machines, 2010
2009
Data-Mining Protein Structure by Clustering, Segmentation and Evolutionary Algorithms.
Proceedings of the Foundations of Computational Intelligence, 2009
Proceedings of the 2009 IEEE Symposium on Design and Diagnostics of Electronic Circuits and Systems, 2009
2008
Proceedings of the 2008 International Conference on Field-Programmable Technology, 2008
2007
Proceedings of the 10th IEEE Workshop on Design & Diagnostics of Electronic Circuits & Systems (DDECS 2007), 2007
2006
A Flexible Technique for the Automatic Design of Approximate String Matching Architectures.
Proceedings of the 9th IEEE Workshop on Design & Diagnostics of Electronic Circuits & Systems (DDECS 2006), 2006
2005
RAP: a new computer program for de novo identification of repeated sequences in whole genomes.
Bioinform., 2005
2003
Bioinform., 2003
2001