Mathieu Lupien

According to our database, Mathieu Lupien authored at least 7 papers between 2013 and 2025.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2025

Numbat-multiome: inferring copy number variations by combining RNA and chromatin accessibility information from single-cell data.

Ruitong Li, Jean-Baptiste Alberge, Tina Keshavarzian, Junko Tsuji, Johan Gustafsson, Mahshid Rahmat, Elizabeth D. Lightbody, Stephanie L. Deng, Santiago Riviero, Mendy Miller, F. Naz Cemre Kalayci, Adrian Wiestner, Clare Sun, Mathieu Lupien, Irene Ghobrial, Erin Parry, Teng Gao, Gad Getz

Briefings Bioinform., 2025

2019

C3D: a tool to predict 3D genomic interactions between cis-regulatory elements.

Tahmid Mehdi, Swneke D. Bailey, Paul Guilhamon, Mathieu Lupien

Bioinform., 2019

2018

SMuRF: a novel tool to identify regulatory elements enriched for somatic point mutations.

Paul Guilhamon, Mathieu Lupien

BMC Bioinform., 2018

2017

Variant Set Enrichment: an R package to identify disease-associated functional genomic regions.

Musaddeque Ahmed, Richard C. Sallari, Haiyang Guo, Jason H. Moore, Housheng H. He, Mathieu Lupien

BioData Min., 2017

2016

PharmacoGx: an R package for analysis of large pharmacogenomic datasets.

Petr Smirnov, Zhaleh Safikhani, Nehme Hachem, Dong Wang, Adrian She, Catharina Olsen, Mark Freeman, Heather Marie Selby, Deena M. A. Gendoo, Patrick Grossmann, Andrew H. Beck, Hugo J. W. L. Aerts, Mathieu Lupien, Anna Goldenberg, Benjamin Haibe-Kains

Bioinform., 2016

2015

ABC: a tool to identify SNVs causing allele-specific transcription factor binding from ChIP-Seq experiments.

Swneke D. Bailey, Carl Virtanen, Benjamin Haibe-Kains, Mathieu Lupien

Bioinform., 2015

2013

Inferring Human Phenotype Networks from Genome-Wide Genetic Associations.

Christian Darabos, Kinjal Desai, Richard Cowper-Sallari, Mario Giacobini, Britney E. Graham, Mathieu Lupien, Jason H. Moore

Proceedings of the Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics, 2013