Matthew Stephens

According to our database, Matthew Stephens authored at least 14 papers between 2007 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

Non-negative matrix factorization algorithms generally improve topic model fits.

Peter Carbonetto, Abhishek Sarkar, Zihao Wang, Matthew Stephens

Stat. Comput., June, 2026

A Flexible Empirical Bayes Approach to Generalized Linear Models, with Applications to Sparse Logistic Regression.

Dongyue Xie, Wanrong Zhu, Matthew Stephens

CoRR, January, 2026

A New Family of Poisson Non-negative Matrix Factorization Methods Using the Shifted Log Link.

Eric Weine, Peter Carbonetto, Rafael A. Irizarry, Matthew Stephens

CoRR, January, 2026

2025

ebnm: An <i>R</i> Package for Solving the Empirical Bayes Normal Means Problem Using a Variety of Prior Families.

Jason Willwerscheid, Peter Carbonetto, Matthew Stephens

J. Stat. Softw., 2025

2024

A flexible empirical Bayes approach to multiple linear regression and connections with penalized regression.

Youngseok Kim, Wei Wang, Peter Carbonetto, Matthew Stephens

J. Mach. Learn. Res., 2024

Accelerated dimensionality reduction of single-cell RNA sequencing data with fastglmpca.

Eric Weine, Peter Carbonetto, Matthew Stephens

Bioinform., 2024

2021

Flexible Signal Denoising via Flexible Empirical Bayes Shrinkage.

Zhengrong Xing, Peter Carbonetto, Matthew Stephens

J. Mach. Learn. Res., 2021

Empirical Bayes Matrix Factorization.

Wei Wang, Matthew Stephens

J. Mach. Learn. Res., 2021

Non-negative matrix factorization algorithms greatly improve topic model fits.

Peter Carbonetto, Abhishek Sarkar, Zihao Wang, Matthew Stephens

CoRR, 2021

2019

Creating and sharing reproducible research code the workflowr way.

John D. Blischak, Peter Carbonetto, Matthew Stephens

F1000Research, 2019

Inference and visualization of DNA damage patterns using a grade of membership model.

Hussein Al-Asadi, Kushal K. Dey, John Novembre, Matthew Stephens

Bioinform., 2019

2018

A new sequence logo plot to highlight enrichment and depletion.

Kushal K. Dey, Dongyue Xie, Matthew Stephens

BMC Bioinform., 2018

2016

Variance adaptive shrinkage (<i>vash</i>): flexible empirical Bayes estimation of variances.

Mengyin Lu, Matthew Stephens

Bioinform., 2016

2007

msHOT: modifying Hudson's ms simulator to incorporate crossover and gene conversion hotspots.

Garrett Hellenthal, Matthew Stephens

Bioinform., 2007