Mehrtash Babadi

According to our database, Mehrtash Babadi authored at least 9 papers between 2006 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

STPath: a generative foundation model for integrating spatial transcriptomics and whole-slide images.

Tinglin Huang, Tianyu Liu, Mehrtash Babadi, Rex Ying, Wengong Jin

npj Digit. Medicine, 2025

TissueMosaic Enables Cross-Sample Differential Analysis of Spatial Transcriptomics Datasets Through Self-supervised Representation Learning.

Sandeep Kambhampati, Luca D'Alessio, Fedor Grab, Stephen Fleming, Fei Chen, Mehrtash Babadi

Proceedings of the Research in Computational Molecular Biology, 2025

Scalable Generation of Spatial Transcriptomics from Histology Images via Whole-Slide Flow Matching.

Tinglin Huang, Tianyu Liu, Mehrtash Babadi, Wengong Jin, Rex Ying

Proceedings of the Forty-second International Conference on Machine Learning, 2025

2024

Capturing cell heterogeneity in representations of cell populations for image-based profiling using contrastive learning.

Robert van Dijk, John Arevalo, Mehrtash Babadi, Anne E. Carpenter, Shantanu Singh

PLoS Comput. Biol., 2024

2023

SynapseCLR: Uncovering features of synapses in primary visual cortex through contrastive representation learning.

Alyssa Wilson, Mehrtash Babadi

Patterns, April, 2023

2021

A Coding Theory Perspective on MultiplexedMolecular Profiling of Biological Tissues.

Luca D'Alessio, Litian Liu, Ken Duffy, Yonina C. Eldar, Muriel Médard, Mehrtash Babadi

CoRR, 2021

2020

CellSegmenter: unsupervised representation learning and instance segmentation of modular images.

Luca D'Alessio, Mehrtash Babadi

CoRR, 2020

A Coding Theory Perspective on Multiplexed Molecular Profiling of Biological Tissues.

Luca D'Alessio, Litian Liu, Ken Duffy, Yonina C. Eldar, Muriel Médard, Mehrtash Babadi

Proceedings of the International Symposium on Information Theory and Its Applications, 2020

2006

Analytical first derivatives of the RE-squared interaction potential.

Mehrtash Babadi, Mohammad Reza Ejtehadi, Ralf Everaers

J. Comput. Phys., 2006