Merja Penttilä

According to our database, Merja Penttilä authored at least 8 papers between 2002 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

PHA synthase variant design using a conditional variational autoencoder.

Tuula Tenkanen, Anna Ylinen, Paula Jouhten, Merja Penttilä, Sandra Castillo

PLoS Comput. Biol., 2026

2022

Strain design optimization using reinforcement learning.

Maryam Sabzevari, Sándor Szedmák, Merja Penttilä, Paula Jouhten, Juho Rousu

PLoS Comput. Biol., 2022

2014

Comparative Genome-Scale Reconstruction of Gapless Metabolic Networks for Present and Ancestral Species.

Esa Pitkänen, Paula Jouhten, Jian Hou, Muhammad Fahad Syed, Peter Blomberg, Jana Kludas, Merja Oja, Liisa Holm, Merja Penttilä, Juho Rousu, Mikko Arvas

PLoS Comput. Biol., 2014

Integration of transcription and flux data reveals molecular paths associated with differences in oxygen-dependent phenotypes of Saccharomyces cerevisiae.

Erno Lindfors, Paula Jouhten, Merja Oja, Eija Rintala, Matej Oresic, Merja Penttilä

BMC Syst. Biol., 2014

2009

¹³C-metabolic flux ratio and novel carbon path analyses confirmed that Trichoderma reesei uses primarily the respirative pathway also on the preferred carbon source glucose.

Paula Jouhten, Esa Pitkänen, Tiina Pakula, Markku Saloheimo, Merja Penttilä, Hannu Maaheimo

BMC Syst. Biol., 2009

2008

Oxygen dependence of metabolic fluxes and energy generation of Saccharomyces cerevisiae CEN.PK113-1A.

Paula Jouhten, Eija Rintala, Anne Huuskonen, Anu Tamminen, Mervi Toivari, Marilyn Wiebe, Laura Ruohonen, Merja Penttilä, Hannu Maaheimo

BMC Syst. Biol., 2008

2005

Optimization of cDNA-AFLP experiments using genomic sequence data.

Teemu Kivioja, Mikko Arvas, Markku Saloheimo, Merja Penttilä, Esko Ukkonen

Bioinform., 2005

2002

Assigning probes into a small number of pools separable by electrophoresis.

Teemu Kivioja, Mikko Arvas, Kari Kataja, Merja Penttilä, Hans Söderlund, Esko Ukkonen

Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002