Paula Jouhten

According to our database, Paula Jouhten authored at least 11 papers between 2008 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Genome-scale metabolic models reveal determinants of phenotypic differences in non-Saccharomyces yeasts.

Jakob P. Pettersen, Sandra Castillo, Paula Jouhten, Eivind Almaas

BMC Bioinform., December, 2023

2022

Strain design optimization using reinforcement learning.

Maryam Sabzevari, Sándor Szedmák, Merja Penttilä, Paula Jouhten, Juho Rousu

PLoS Comput. Biol., 2022

2014

Comparative Genome-Scale Reconstruction of Gapless Metabolic Networks for Present and Ancestral Species.

Esa Pitkänen, Paula Jouhten, Jian Hou, Muhammad Fahad Syed, Peter Blomberg, Jana Kludas, Merja Oja, Liisa Holm, Merja Penttilä, Juho Rousu, Mikko Arvas

PLoS Comput. Biol., 2014

Integration of transcription and flux data reveals molecular paths associated with differences in oxygen-dependent phenotypes of Saccharomyces cerevisiae.

Erno Lindfors, Paula Jouhten, Merja Oja, Eija Rintala, Matej Oresic, Merja Penttilä

BMC Syst. Biol., 2014

2010

Reconstruction of the yeast protein-protein interaction network involved in nutrient sensing and global metabolic regulation.

Subir K. Nandy, Paula Jouhten, Jens Nielsen

BMC Syst. Biol., 2010

A multi-level study of recombinant Pichia pastoris in different oxygen conditions.

Kristin Baumann, Marc Carnicer, Martin Dragosits, Alexandra Graf, Johannes Stadlmann, Paula Jouhten, Hannu Maaheimo, Brigitte Gasser, Joan Albiol, Diethard Mattanovich, Pau Ferrer

BMC Syst. Biol., 2010

2009

Inferring branching pathways in genome-scale metabolic networks.

Esa Pitkänen, Paula Jouhten, Juho Rousu

BMC Syst. Biol., 2009

¹³C-metabolic flux ratio and novel carbon path analyses confirmed that Trichoderma reesei uses primarily the respirative pathway also on the preferred carbon source glucose.

Paula Jouhten, Esa Pitkänen, Tiina Pakula, Markku Saloheimo, Merja Penttilä, Hannu Maaheimo

BMC Syst. Biol., 2009

2008

ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis.

Esa Pitkänen, Arto Åkerlund, Ari Rantanen, Paula Jouhten, Esko Ukkonen

J. Integr. Bioinform., 2008

Oxygen dependence of metabolic fluxes and energy generation of Saccharomyces cerevisiae CEN.PK113-1A.

Paula Jouhten, Eija Rintala, Anne Huuskonen, Anu Tamminen, Mervi Toivari, Marilyn Wiebe, Laura Ruohonen, Merja Penttilä, Hannu Maaheimo

BMC Syst. Biol., 2008

An analytic and systematic framework for estimating metabolic flux ratios from ¹³<i>C </i>tracer experiments.

Ari Rantanen, Juho Rousu, Paula Jouhten, Nicola Zamboni, Hannu Maaheimo, Esko Ukkonen

BMC Bioinform., 2008