Merrill Knapp

According to our database, Merrill Knapp authored at least 19 papers between 2002 and 2020.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2020

Fuzzy Matching for Cellular Signaling Networks in a Choroidal Melanoma Model.

Adrián Riesco, Beatriz Santos-Buitrago, Merrill Knapp, Gustavo Santos-García, Emiliano Hernández Galilea, Carolyn L. Talcott

Proceedings of the Practical Applications of Computational Biology & Bioinformatics, 2020

2019

Transcriptional Response of SK-N-AS Cells to Methamidophos.

Akos Vertes, Albert-Baskar Arul, Peter Avar, Andrew R. Korte, Lida Parvin, Ziad J. Sahab, Deborah I. Bunin, Merrill Knapp, Denise Nishita, Andrew Poggio, Mark-Oliver Stehr, Carolyn L. Talcott, Brian M. Davis, Christine A. Morton, Christopher J. Sevinsky, Maria I. Zavodszky

CoRR, 2019

Probabilistic Approximate Logic and its Implementation in the Logical Imagination Engine.

Mark-Oliver Stehr, Minyoung Kim, Carolyn L. Talcott, Merrill Knapp, Akos Vertes

CoRR, 2019

Learning Causality: Synthesis of Large-Scale Causal Networks from High-Dimensional Time Series Data.

Mark-Oliver Stehr, Peter Avar, Andrew R. Korte, Lida Parvin, Ziad J. Sahab, Deborah I. Bunin, Merrill Knapp, Denise Nishita, Andrew Poggio, Carolyn L. Talcott, Brian M. Davis, Christine A. Morton, Christopher J. Sevinsky, Maria I. Zavodszky, Akos Vertes

CoRR, 2019

Soft Set Theory for Decision Making in Computational Biology Under Incomplete Information.

Beatriz Santos-Buitrago, Adrián Riesco, Merrill Knapp, José Carlos R. Alcantud, Gustavo Santos-García, Carolyn L. Talcott

IEEE Access, 2019

Transcriptional Response of SK-N-AS Cells to Methamidophos (Extended Abstract).

Akos Vertes, Albert-Baskar Arul, Peter Avar, Andrew R. Korte, Lida Parvin, Ziad J. Sahab, Deborah I. Bunin, Merrill Knapp, Denise Nishita, Andrew Poggio, Mark-Oliver Stehr, Carolyn L. Talcott, Brian M. Davis, Christine A. Morton, Christopher J. Sevinsky, Maria I. Zavodszky

Proceedings of the Computational Methods in Systems Biology, 2019

2018

Inferring Mechanism of Action of an Unknown Compound from Time Series Omics Data.

Akos Vertes, Albert-Baskar Arul, Peter Avar, Andrew R. Korte, Hang Li, Peter Nemes, Lida Parvin, Sylwia Stopka, Sunil Hwang, Ziad J. Sahab, Linwen Zhang, Deborah I. Bunin, Merrill Knapp, Andrew Poggio, Mark-Oliver Stehr, Carolyn L. Talcott, Brian M. Davis, Sean R. Dinn, Christine A. Morton, Christopher J. Sevinsky, Maria I. Zavodszky

Proceedings of the Computational Methods in Systems Biology, 2018

2017

Reverse Inference in Symbolic Systems Biology.

Beatriz Santos-Buitrago, Adrián Riesco, Merrill Knapp, Gustavo Santos-García, Carolyn L. Talcott

Proceedings of the 11th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2017

Explaining Response to Drugs Using Pathway Logic.

Carolyn L. Talcott, Merrill Knapp

Proceedings of the Computational Methods in Systems Biology, 2017

2015

Inferring Executable Models from Formalized Experimental Evidence.

Vivek Nigam, Robin Donaldson, Merrill Knapp, Tim McCarthy, Carolyn L. Talcott

Proceedings of the Computational Methods in Systems Biology, 2015

2011

Applications of Pathway Logic Modeling to Target Identification.

Anupama Panikkar, Merrill Knapp, Huaiyu Mi, Dave Anderson, Krishna Kodukula, Amit K. Galande, Carolyn L. Talcott

Proceedings of the Formal Modeling: Actors, Open Systems, Biological Systems, 2011

2010

Understanding signalling networks as collections of signal transduction pathways.

Robin Donaldson, Carolyn L. Talcott, Merrill Knapp, Muffy Calder

Proceedings of the Computational Methods in Systems Biology, 8th International Conference, 2010

2007

Spectral Decomposition of Signaling Networks.

Bahram Parvin, Nirmalya Ghosh, Laura Heiser, Merrill Knapp, Carolyn L. Talcott, Keith Laderoute, Joe W. Gray, Paul T. Spellman

Proceedings of the 2007 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2007

Analyzing Pathways Using SAT-Based Approaches.

Ashish Tiwari, Carolyn L. Talcott, Merrill Knapp, Patrick Lincoln, Keith Laderoute

Proceedings of the Algebraic Biology, Second International Conference, 2007

2005

The Pathalyzer: A Tool for Analysis of Signal Transduction Pathways.

David L. Dill, Merrill Knapp, Pamela Gage, Carolyn L. Talcott, Keith Laderoute, Patrick Lincoln

Proceedings of the Systems Biology and Regulatory Genomics, 2005

Pathway Logic Helping Biologists Understand and Organize Pathway Information.

Merrill Knapp, Linda Briesemeister, Steven Eker, Patrick Lincoln, Andy Poggio, Carolyn L. Talcott, Keith Laderoute

Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005

2004

Pathway Logic Modeling of Protein Functional Domains in Signal Transduction.

Carolyn L. Talcott, Steven Eker, Merrill Knapp, Patrick Lincoln, Keith Laderoute

Proceedings of the Biocomputing 2004, 2004

2002

Pathway Logic: Executable Models of Biological Networks.

Steven Eker, Merrill Knapp, Keith Laderoute, Patrick Lincoln, Carolyn L. Talcott

Proceedings of the Fourth International Workshop on Rewriting logic and Its Applications, 2002

Pathway Logic: Symbolic Analysis of Biological Signaling.

Steven Eker, Merrill Knapp, Keith Laderoute, Patrick Lincoln, José Meseguer, M. Kemal Sönmez

Proceedings of the 7th Pacific Symposium on Biocomputing, 2002