Mohamed Ibrahim Abouelhoda

According to our database1, Mohamed Ibrahim Abouelhoda authored at least 21 papers between 2002 and 2014.

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Bibliography

2014
Computing the Burrows-Wheeler transform of a string and its reverse in parallel.
J. Discrete Algorithms, 2014

2012
Computing the Burrows-Wheeler Transform of a String and Its Reverse.
Proceedings of the Combinatorial Pattern Matching - 23rd Annual Symposium, 2012

2010
Parallel Chaining Algorithms.
Proceedings of the Recent Advances in the Message Passing Interface, 2010

2009
Alignment of Minisatellite Maps Based on Run-Length Encoding Scheme.
J. Bioinform. Comput. Biol., 2009

WinBioinfTools: Bioinformatics Tools for Windows High Performance Computing Server 2008
CoRR, 2009

WinBioinfTools: Bioinformatics tools for Windows cluster.
Proceedings of the 2009 IEEE International Conference on Cluster Computing, August 31, 2009

2008
A fast algorithm for the multiple genome rearrangement problem with weighted reversals and transpositions.
BMC Bioinform., 2008

CoCoNUT: an efficient system for the comparison and analysis of genomes.
BMC Bioinform., 2008

Alignment of Minisatellite Maps: A Minimum Spanning Tree-based Approach.
Proceedings of the 6th Asia-Pacific Bioinformatics Conference, 2008

2007
A linear time algorithm for the inversion median problem in circular bacterial genomes.
J. Discrete Algorithms, 2007

A Chaining Algorithm for Mapping cDNA Sequences to Multiple Genomic Sequences.
Proceedings of the String Processing and Information Retrieval, 2007

2005
Chaining algorithms for multiple genome comparison.
J. Discrete Algorithms, 2005

Algorithmen und Softwarewerkzeuge für Vergleichende Genomanalyse.
Proceedings of the Ausgezeichnete Informatikdissertationen 2005, 2005

Efficient mapping of large cDNA/EST databases to genomes: A comparison of two different strategies.
Proceedings of the German Conference on Bioinformatics (GCB 2005), Hamburg, 2005

The Median Problem for the Reversal Distance in Circular Bacterial Genomes.
Proceedings of the Combinatorial Pattern Matching, 16th Annual Symposium, 2005

Algorithms and a software system for comparative genome analysis.
PhD thesis, 2005

2004
Replacing suffix trees with enhanced suffix arrays.
J. Discrete Algorithms, 2004

2003
A Local Chaining Algorithm and Its Applications in Comparative Genomics.
Proceedings of the Algorithms in Bioinformatics, Third International Workshop, 2003

Multiple Genome Alignment: Chaining Algorithms Revisited.
Proceedings of the Combinatorial Pattern Matching, 14th Annual Symposium, 2003

2002
The Enhanced Suffix Array and Its Applications to Genome Analysis.
Proceedings of the Algorithms in Bioinformatics, Second International Workshop, 2002

Optimal Exact Strring Matching Based on Suffix Arrays.
Proceedings of the String Processing and Information Retrieval, 2002


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