Neil D. Clarke

According to our database, Neil D. Clarke authored at least 5 papers between 2003 and 2012.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2012

Computer and Statistical Analysis of Transcription Factor Binding and Chromatin Modifications by ChIP-seq data in Embryonic Stem Cell.

Yuriy L. Orlov, Han Xu, Dmitry A. Afonnikov, Bing Lim, Jian-Chien Heng, Ping Yuan, Ming Chen, Junli Yan, Neil D. Clarke, Nina Orlova, Mikael Huss, Konstantin V. Gunbin, Nikolay Podkolodnyy, Huck-Hui Ng

J. Integr. Bioinform., 2012

2010

Blurring of High-Resolution Data Shows that the Effect of Intrinsic Nucleosome Occupancy on Transcription Factor Binding is Mostly Regional, Not Local.

Wee Siong Goh, Yuriy L. Orlov, Jingmei Li, Neil D. Clarke

PLoS Comput. Biol., 2010

2009

Inferring Transcription Factor Targets from Gene Expression Changes and Predicted Promoter Occupancy.

Zhen Xuan Yeo, Hock Chuan Yeo, Joan Keng Suan Yeo, Ai Li Yeo, Ye Li, Neil D. Clarke

J. Comput. Biol., 2009

Transcription Factor Binding Probabilities in Orthologous Promoters: An Alignment-Free Approach to the Inference of Functional Regulatory Targets.

Xiao Liu, Neil D. Clarke

Proceedings of the Comparative Genomics, International Workshop, 2009

2003

Rank order metrics for quantifying the association of sequence features with gene regulation.

Neil D. Clarke, Joshua A. Granek

Bioinform., 2003