Olivier Elemento

According to our database, Olivier Elemento authored at least 24 papers between 2002 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2025

Predicting response to neoadjuvant chemotherapy in muscle-invasive bladder cancer via interpretable multimodal deep learning.

Zilong Bai, Mohamed Osman, Matthew Brendel, Catherine M. Tangen, Thomas W. Flaig, Ian M. Thompson, Melissa Plets, M. Scott Lucia, Dan Theodorescu, Daniel Gustafson, Siamak Daneshmand, Joshua J. Meeks, Woonyoung Choi, Colin P. N. Dinney, Olivier Elemento, Seth P. Lerner, David J. McConkey, Bishoy M. Faltas, Fei Wang

npj Digit. Medicine, 2025

The Bridge2AI-voice application: initial feasibility study of voice data acquisition through mobile health.

Elijah Moothedan, Micah Boyer, Stephanie Watts, Yassmeen Abdel-Aty, Satrajit Ghosh, Anaïs Rameau, Alexandros Sigaras, Olivier Elemento, Yael Bensoussan

Frontiers Digit. Health, 2025

2024

Benchmarking multi-ancestry prostate cancer polygenic risk scores in a real-world cohort.

Yajas Shah, Scott Kulm, Jones T. Nauseef, Zhengming Chen, Olivier Elemento, Kevin H. Kensler, Ravi N. Sharaf

PLoS Comput. Biol., 2024

Developing Multi-Disorder Voice Protocols: A team science approach involving clinical expertise, bioethics, standards, and DEI.

Anaïs Rameau, Satrajit Ghosh, Alexandros Sigaras, Olivier Elemento, Jean-Christophe Bélisle-Pipon, Vardit Ravitsky, Maria Powell, Alistair Johnson, David Dorr, Philip R. O. Payne, Micah Boyer, Stephanie Watts, Ruth Bahr, Frank Rudzicz, Jordan Lerner-Ellis, Shaheen Awan, Don Bolser, Yael Bensoussan

Proceedings of the 25th Annual Conference of the International Speech Communication Association, 2024

2022

Application of Deep Learning on Single-cell RNA Sequencing Data Analysis: A Review.

Matthew Brendel, Chang Su, Zilong Bai, Hao Zhang, Olivier Elemento, Fei Wang

Genom. Proteom. Bioinform., October, 2022

2020

A machine learning and network framework to discover new indications for small molecules.

Coryandar Gilvary, Jamal Elkhader, Neel Madhukar, Claire Henchcliffe, Marcus D. Goncalves, Olivier Elemento

PLoS Comput. Biol., 2020

ABEMUS: platform-specific and data-informed detection of somatic SNVs in cfDNA.

Nicola Casiraghi, Francesco Orlando, Yari Ciani, Jenny Xiang, Andrea Sboner, Olivier Elemento, Gerhardt Attard, Himisha Beltran, Francesca Demichelis, Alessandro Romanel

Bioinform., 2020

Graph convolutional networks for computational drug development and discovery.

Mengying Sun, Sendong Zhao, Coryandar Gilvary, Olivier Elemento, Jiayu Zhou, Fei Wang

Briefings Bioinform., 2020

Structure-Based Drug-Drug Interaction Detection via Expressive Graph Convolutional Networks and Deep Sets (Student Abstract).

Mengying Sun, Fei Wang, Olivier Elemento, Jiayu Zhou

Proceedings of the Thirty-Fourth AAAI Conference on Artificial Intelligence, 2020

2019

Predicting peptide presentation by major histocompatibility complex class I: an improved machine learning approach to the immunopeptidome.

Kevin Michael Boehm, Bhavneet Bhinder, Vijay Joseph Raja, Noah Dephoure, Olivier Elemento

BMC Bioinform., December, 2019

Deep learning enables robust assessment and selection of human blastocysts after in vitro fertilization.

Pegah Khosravi, Ehsan Kazemi, Qiansheng Zhan, Jonas Malmsten, Marco Toschi, Pantelis Zisimopoulos, Alexandros Sigaras, Stuart Lavery, Lee A. D. Cooper, Cristina Hickman, Marcos Meseguer, Zev Rosenwaks, Olivier Elemento, Nikica Zaninovic, Iman Hajirasouliha

npj Digit. Medicine, 2019

Drug knowledge bases and their applications in biomedical informatics research.

Yongjun Zhu, Olivier Elemento, Jyotishman Pathak, Fei Wang

Briefings Bioinform., 2019

2018

Breast Cancer Histopathological Image Classification: A Deep Learning Approach.

Mahboubeh Jannesari, Mehdi Habibzadeh, HamidReza Aboulkheyr, Pegah Khosravi, Olivier Elemento, Mehdi Totonchi, Iman Hajirasouliha

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017

A Computational Approach for Identifying Synergistic Drug Combinations.

Kaitlyn M. Gayvert, Omar Aly, James Platt, Marcus W. Bosenberg, David F. Stern, Olivier Elemento

PLoS Comput. Biol., 2017

The cancer precision medicine knowledge base for structured clinical-grade mutations and interpretations.

Linda Huang, Helen Fernandes, Hamid Zia, Peyman Tavassoli, Hanna Rennert, David Pisapia, Marcin Imielinski, Andrea Sboner, Mark A. Rubin, Michael Kluk, Olivier Elemento

J. Am. Medical Informatics Assoc., 2017

EthSEQ: ethnicity annotation from whole exome sequencing data.

Alessandro Romanel, Tuo Zhang, Olivier Elemento, Francesca Demichelis

Bioinform., 2017

2016

A primer on precision medicine informatics.

Andrea Sboner, Olivier Elemento

Briefings Bioinform., 2016

Practical Analysis of Genome Contact Interaction Experiments.

Mark A. Carty, Olivier Elemento

Proceedings of the Statistical Genomics - Methods and Protocols, 2016

2011

An integrated ChIP-seq analysis platform with customizable workflows.

Eugenia G. Giannopoulou, Olivier Elemento

BMC Bioinform., 2011

2009

DISPARE: DIScriminative PAttern REfinement for Position Weight Matrices.

Isabelle da Piedade, Man-Hung Eric Tang, Olivier Elemento

BMC Bioinform., 2009

2007

Reconstructing the duplication history of tandemly repeated sequences.

Olivier Gascuel, Denis Bertrand, Olivier Elemento

Proceedings of the Mathematics of Evolution and Phylogeny., 2007

2005

Revealing Posttranscriptional Regulatory Elements Through Network-Level Conservation.

Chang S. Chan, Olivier Elemento, Saeed Tavazoie

PLoS Comput. Biol., 2005

An exact and polynomial distance-based algorithm to reconstruct single copy tandem duplication trees.

Olivier Elemento, Olivier Gascuel

J. Discrete Algorithms, 2005

2002

An efficient and accurate distance based algorithm to reconstruct tandem duplication trees.

Olivier Elemento, Olivier Gascuel

Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002