Philip R. O. Payne

Orcid: 0000-0002-9532-2998

According to our database1, Philip R. O. Payne authored at least 108 papers between 2003 and 2024.

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Bibliography

2024
sc2MeNetDrug: A computational tool to uncover inter-cell signaling targets and identify relevant drugs based on single cell RNA-seq data.
PLoS Comput. Biol., January, 2024

Highly Accurate Disease Diagnosis and Highly Reproducible Biomarker Identification with PathFormer.
CoRR, 2024

2023
Electronic health record data quality assessment and tools: a systematic review.
J. Am. Medical Informatics Assoc., September, 2023

Multi-horizon predictive models for guiding extracorporeal resource allocation in critically ill COVID-19 patients.
J. Am. Medical Informatics Assoc., March, 2023

Improving Normative Modeling for Multi-modal Neuroimaging Data using mixture-of-product-of-experts variational autoencoders.
CoRR, 2023

Universal Normalization Enhanced Graph Representation Learning for Gene Network Prediction.
CoRR, 2023

Normative modeling using multimodal variational autoencoders to identify abnormal brain volume deviations in Alzheimer's disease.
Proceedings of the Medical Imaging 2023: Computer-Aided Diagnosis, 2023

Assisting Clinical Decisions for Scarcely Available Treatment via Disentangled Latent Representation.
Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, 2023

2022
Respiratory support status from EHR data for adult population: classification, heuristics, and usage in predictive modeling.
J. Am. Medical Informatics Assoc., 2022

Demonstrating an approach for evaluating synthetic geospatial and temporal epidemiologic data utility: results from analyzing >1.8 million SARS-CoV-2 tests in the United States National COVID Cohort Collaborative (N3C).
J. Am. Medical Informatics Assoc., 2022

Sepsis Prediction for the General Ward Setting.
Frontiers Digit. Health, 2022

Interpreting mechanism of Synergism of drug combinations using attention based hierarchical graph pooling.
CoRR, 2022

Self-explaining neural network with concept-based explanations for ICU mortality prediction.
Proceedings of the BCB '22: 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, Northbrook, Illinois, USA, August 7, 2022

Effect of Patient Switching on EHR-based Workload and Wrong-Patient Errors.
Proceedings of the AMIA 2022, 2022

2021
Computational analysis to repurpose drugs for COVID-19 based on transcriptional response of host cells to SARS-CoV-2.
BMC Medical Informatics Decis. Mak., 2021

A retrospective look at the predictions and recommendations from the 2009 AMIA policy meeting: did we see EHR-related clinician burnout coming?
J. Am. Medical Informatics Assoc., 2021

Use of electronic health records to support a public health response to the COVID-19 pandemic in the United States: a perspective from 15 academic medical centers.
J. Am. Medical Informatics Assoc., 2021

Conceptual considerations for using EHR-based activity logs to measure clinician burnout and its effects.
J. Am. Medical Informatics Assoc., 2021

The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment.
J. Am. Medical Informatics Assoc., 2021

Ten principles for data sharing and commercialization.
J. Am. Medical Informatics Assoc., 2021

Self-explaining Neural Network with Plausible Explanations.
CoRR, 2021

Machine learning for modeling the progression of Alzheimer disease dementia using clinical data: a systematic literature review.
CoRR, 2021

Pattern recognition in lymphoid malignancies using CytoGPS and Mercator.
BMC Bioinform., 2021


Multi-horizon prediction for extracorporeal support in COVID-19 patients.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

Public Health Informatics in a Global Pandemic: In the COVID response trenches.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

Use of Healthcare Information Technology and Data Platforms to Inform Pandemic Response: Perspectives at the Intersection of Academic Healthcare Provider Organizations and Industry Partners.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020
Cognitive plausibility in voice-based AI health counselors.
npj Digit. Medicine, 2020

Language matters: precision health as a cross-cutting care, research and policy agenda.
J. Am. Medical Informatics Assoc., 2020

When past is not a prologue: Adapting informatics practice during a pandemic.
J. Am. Medical Informatics Assoc., 2020

Using REDCap and Apple ResearchKit to integrate patient questionnaires and clinical decision support into the electronic health record to improve sexually transmitted infection testing in the emergency department.
J. Am. Medical Informatics Assoc., 2020

Predicting Tumor Cell Response to Synergistic Drug Combinations Using a Novel Simplified Deep Learning Model.
Proceedings of the AMIA 2020, 2020

2019
A protocol to evaluate RNA sequencing normalization methods.
BMC Bioinform., 2019

CytoGPS: a web-enabled karyotype analysis tool for cytogenetics.
Bioinform., 2019

Informatics-Enabled Learning Health Systems: Strategies for Success from Four Academic Medical Centers.
Proceedings of the AMIA 2019, 2019

Foundations for Studying Clinical Workflow: Development of a Composite Inter-Observer Reliability Assessment for Workflow Time Studies.
Proceedings of the AMIA 2019, 2019

2018
Synergistic Drug Combination Prediction by Integrating Multi-omics Data in Deep Learning Models.
CoRR, 2018

Diffusion mapping of drug targets on disease signaling network elements reveals drug combination strategies.
Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018

The diversity and disparity in biomedical informatics (DDBI) workshop.
Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018

Session introduction.
Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018

Comparison of Electric Wheelchair Control Systems in a Virtual Environment.
Proceedings of the 2018 10th Computer Science and Electronic Engineering Conference, 2018

Panel: Collaborative Science Within Academic Medical Centers: Opportunities and Challenges for Informatics.
Proceedings of the AMIA 2018, 2018

2017
MD-Miner: a network-based approach for personalized drug repositioning.
BMC Syst. Biol., 2017

Open Data for Discovery Science.
Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017

Retrospective Analysis of EHR and Administrative Data for Drug Repurposing Hypothesis Evaluation in Melanoma.
Proceedings of the Summit on Clinical Research Informatics, 2017

A Scalable Approach to Federating Distributed Data: The Avec® Platform.
Proceedings of the AMIA 2017, 2017

2016
Rethinking the role and impact of health information technology: informatics as an interventional discipline.
BMC Medical Informatics Decis. Mak., 2016

The geographic distribution of cardiovascular health in the stroke prevention in healthcare delivery environments (SPHERE) study.
J. Biomed. Informatics, 2016

'RE: fine drugs': an interactive dashboard to access drug repurposing opportunities.
Database J. Biol. Databases Curation, 2016

Session Introduction.
Proceedings of the Biocomputing 2016: Proceedings of the Pacific Symposium, 2016

Using Karyotype Data for Automated Disease Classification: A Proof of Concept Demonstration.
Proceedings of the Summit on Clinical Research Informatics, 2016

Use of Administrative Data to Predict Risk of Liver Disease.
Proceedings of the Summit on Clinical Research Informatics, 2016

2015
Conceptual Knowledge Discovery in Databases for Drug Combinations Predictions in Malignant Melanoma.
Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015

Real-time Data Fusion Platforms: The Need of Multi-dimensional Data-driven Research in Biomedical Informatics.
Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015

Domain Analysis of Integrated Data to Reduce Cost Associated with Liver Disease.
Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015

A Metadata based Knowledge Discovery Methodology for Seeding Translational Research.
Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015

Text Mining and Data Modeling of Karyotypes to aid in Drug Repurposing Efforts.
Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015

RECRUIT: Roadmap to Enhance Clinical trial Recruitment Using Information Technology.
Proceedings of the AMIA 2015, 2015

A Novel Multiple Choice Question Generation Strategy: Alternative Uses for Controlled Vocabulary Thesauri in Biomedical-Sciences Education.
Proceedings of the AMIA 2015, 2015

Analysis of the Great Divide Between Cardiovascular Risk and Health Scores.
Proceedings of the AMIA 2015, 2015

2014
Community-level determinants of obesity: harnessing the power of electronic health records for retrospective data analysis.
BMC Medical Informatics Decis. Mak., 2014

Time motion studies in healthcare: What are we talking about?
J. Biomed. Informatics, 2014

Advancing methodologies in Clinical Research Informatics (CRI): Foundational work for a maturing field.
J. Biomed. Informatics, 2014

Towards Symbiosis in Knowledge Representation and Natural Language Processing for Structuring Clinical Practice Guidelines.
Proceedings of the Nursing Informatics 2014 - East Meets West eSMART+, 2014

Lessons Learned Bringing Public Health into the Primary Care Clinic through an EHR-based Application.
Proceedings of the AMIA 2014, 2014

2013
People, organizational, and leadership factors impacting informatics support for clinical and translational research.
BMC Medical Informatics Decis. Mak., 2013

TimeCaT: a Comprehensive Tool for Time Motion Studies.
Proceedings of the MEDINFO 2013, 2013

Research Informatics : Re-engineering the Research Enterprise.
Proceedings of the AMIA 2013, 2013

Enabling Integrative Auditing and Reporting for the TRITON Platform using Big Data Technologies.
Proceedings of the AMIA 2013, 2013

Inter-Observer Reliability Assessments in Time Motion Studies: The Foundation for Meaningful Clinical Workflow Analysis.
Proceedings of the AMIA 2013, 2013

Utilization of Hadoop Framework to Enable Semantic Search over Big Data.
Proceedings of the AMIA 2013, 2013

2012
Transactional Database Transformation and Its Application in Prioritizing Human Disease Genes.
IEEE ACM Trans. Comput. Biol. Bioinform., 2012

Chapter 1: Biomedical Knowledge Integration.
PLoS Comput. Biol., 2012

Computational challenges and human factors influencing the design and use of clinical research participant eligibility pre-screening tools.
BMC Medical Informatics Decis. Mak., 2012

k-Neighborhood decentralization: A comprehensive solution to index the UMLS for large scale knowledge discovery.
J. Biomed. Informatics, 2012

Applying knowledge-anchored hypothesis discovery methods to advance clinical and translational research: the OAMiner project.
J. Am. Medical Informatics Assoc., 2012

CohortIQ: An Integrative Bio-specimen Discovery and Annotation Portal.
Proceedings of the AMIA 2012, 2012

Time Capture Tool (TimeCaT): Development of a Comprehensive Application to Support Data Capture for Time Motion Studies.
Proceedings of the AMIA 2012, 2012

ResearchIQ: An Ontology-anchored Knowledge and Resource Discovery Tool.
Proceedings of the AMIA 2012, 2012

Development of an Informatics-Based Predictive Model for 30-Day Readmission Customized for a Single Hospital System.
Proceedings of the AMIA 2012, 2012

2011
The joint summits on translational science: Crossing the translational chasm.
J. Biomed. Informatics, 2011

Selected Papers from the 2011 Summit on Clinical Research Informatics.
J. Biomed. Informatics, 2011

Research-IQ: Development and evaluation of an ontology-anchored integrative query tool.
J. Biomed. Informatics, 2011

The TOKEn project: knowledge synthesis for in silico science.
J. Am. Medical Informatics Assoc., 2011

2010
Foundational biomedical informatics research in the clinical and translational science era: a call to action.
J. Am. Medical Informatics Assoc., 2010

Using gene co-expression network analysis to predict biomarkers for chronic lymphocytic leukemia.
BMC Bioinform., 2010

Multi-dimensional discovery of biomarker and phenotype complexes.
BMC Bioinform., 2010

2009
A Knowledge-Anchored Integrative Image Search and Retrieval System.
J. Digit. Imaging, 2009

Research Paper: Clinical Research Informatics: Challenges, Opportunities and Definition for an Emerging Domain.
J. Am. Medical Informatics Assoc., 2009

Clinical Attribute Network for Chronic Lymphocytic Leukemia.
Proceedings of the 2009 IEEE International Conference on Bioinformatics and Biomedicine, 2009

2008
e-Science, caGrid, and Translational Biomedical Research.
Computer, 2008

A Roadmap for caGrid, an Enterprise Grid Architecture for Biomedical Research.
Proceedings of the Global Healthgrid: e-Science Meets Biomedical Informatics, 2008

Supporting the Design of Translational Clinical Studies through the Generation and Verification of Conceptual Knowledge-anchored Hypotheses.
Proceedings of the AMIA 2008, 2008

2007
Conceptual knowledge acquisition in biomedicine: A methodological review.
J. Biomed. Informatics, 2007

A Day in the Life of a Clinical Research Coordinator: Observations from Community Practice Settings.
Proceedings of the MEDINFO 2007 - Proceedings of the 12th World Congress on Health (Medical) Informatics, 2007

Modeling Participant-Related Clinical Research Events Using Conceptual Knowledge Acquisition Techniques.
Proceedings of the AMIA 2007, 2007

Identifying Challenges and Opportunities in Clinical Research Informatics: Analysis of a Facilitated Discussion at the 2006 AMIA Annual Symposium.
Proceedings of the AMIA 2007, 2007

2006
Impact measures for libraries and information services.
Libr. Hi Tech, 2006

Presentation discovery: building a better icon.
Proceedings of the Extended Abstracts Proceedings of the 2006 Conference on Human Factors in Computing Systems, 2006

Human Computer Interaction Issues in Clinical Trials Management Systems.
Proceedings of the AMIA 2006, 2006

Consensus-based Construction of a Taxonomy of Clinical Trial Tasks.
Proceedings of the AMIA 2006, 2006

Modeling Clinical Trials Workflow in Community Practice Settings.
Proceedings of the AMIA 2006, 2006

Coverage of Clinical Trials Tasks in Existing Ontologies.
Proceedings of the AMIA 2006, 2006

Novel Techniques for Survey and Classification Studies to Improve Patient Centered Websites.
Proceedings of the AMIA 2006, 2006

2005
Research Paper: Quantifying Visual Similarity in Clinical Iconic Graphics.
J. Am. Medical Informatics Assoc., 2005

2003
Quantifying Visual Similarity in Clinical Iconic Graphics.
Proceedings of the AMIA 2003, 2003

CRC Clinical Trials Management System (CTMS): An Integrated Information Management Solution for Collaborative Clinical Research.
Proceedings of the AMIA 2003, 2003

CRC Tissue Core Management System (TCMS): Integration of Basic Science and Clinical Data for Translational Research.
Proceedings of the AMIA 2003, 2003


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