Olivier Gascuel

According to our database1, Olivier Gascuel authored at least 52 papers between 1988 and 2019.

Collaborative distances:

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Other 

Links

On csauthors.net:

Bibliography

2019
Accounting for ambiguity in ancestral sequence reconstruction.
Bioinformatics, 2019

Rapidly Computing the Phylogenetic Transfer Index.
Proceedings of the 19th International Workshop on Algorithms in Bioinformatics, 2019

2018
Improving pairwise comparison of protein sequences with domain co-occurrence.
PLoS Computational Biology, 2018

2017
Inferring epidemiological parameters from phylogenies using regression-ABC: A comparative study.
PLoS Computational Biology, 2017

2016
Distance-Based Phylogeny Reconstruction: Safety and Edge Radius.
Encyclopedia of Algorithms, 2016

Fast and accurate branch lengths estimation for phylogenomic trees.
BMC Bioinformatics, 2016

A 'Stochastic Safety Radius' for Distance-Based Tree Reconstruction.
Algorithmica, 2016

2015
TCS: a web server for multiple sequence alignment evaluation and phylogenetic reconstruction.
Nucleic Acids Research, 2015

2014
FastMG: a simple, fast, and accurate maximum likelihood procedure to estimate amino acid replacement rate matrices from large data sets.
BMC Bioinformatics, 2014

2013
Searching for virus phylotypes.
Bioinformatics, 2013

The Behavior of Admixed Populations in Neighbor-Joining Inference of Population Trees.
Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013

2012
Fitting hidden Markov models of protein domains to a target species: application to Plasmodium falciparum.
BMC Bioinformatics, 2012

Enhancing Protein Domain Detection Using Domain Co-occurrence and Domain Exclusion.
Proceedings of the 23rd International Workshop on Database and Expert Systems Applications, 2012

2011
ReplacementMatrix: a web server for maximum-likelihood estimation of amino acid replacement rate matrices.
Bioinformatics, 2011

2009
Consistency of Topological Moves Based on the Balanced Minimum Evolution Principle of Phylogenetic Inference.
IEEE/ACM Trans. Comput. Biology Bioinform., 2009

Detection of new protein domains using co-occurrence: application to Plasmodium falciparum.
Bioinformatics, 2009

2008
Distance-Based Phylogeny Reconstruction (Optimal Radius).
Proceedings of the Encyclopedia of Algorithms - 2008 Edition, 2008

Phylogeny.fr: robust phylogenetic analysis for the non-specialist.
Nucleic Acids Research, 2008

Fast NJ-like algorithms to deal with incomplete distance matrices.
BMC Bioinformatics, 2008

PlasmoDraft: a database of Plasmodium falciparum gene function predictions based on postgenomic data.
BMC Bioinformatics, 2008

Empirical profile mixture models for phylogenetic reconstruction.
Bioinformatics, 2008

Using repeated measurements to validate hierarchical gene clusters.
Bioinformatics, 2008

2007
Duplication and Inversion History of a Tandemly Repeated Genes Family.
Journal of Computational Biology, 2007

2006
A simple method to predict protein-binding from aligned sequences - application to MHC superfamily and ß2-microglobulin.
Bioinformatics, 2006

Evolution of Tandemly Repeated Sequences Through Duplication and Inversion.
Proceedings of the Comparative Genomics, 2006

2005
Topological Rearrangements and Local Search Method for Tandem Duplication Trees.
IEEE/ACM Trans. Comput. Biology Bioinform., 2005

PHYML Online - a web server for fast maximum likelihood-based phylogenetic inference.
Nucleic Acids Research, 2005

An exact and polynomial distance-based algorithm to reconstruct single copy tandem duplication trees.
J. Discrete Algorithms, 2005

Improving the efficiency of SPR moves in phylogenetic tree search methods based on maximum likelihood.
Bioinformatics, 2005

Discrimination of yeast genes involved in methionine and phosphate metabolism on the basis of upstream motifs.
Bioinformatics, 2005

2004
Performance Analysis of Hierarchical Clustering Algorithms.
J. Classification, 2004

2003
A Ring Architecture Strategy for BIST Test Pattern Generation.
J. Electronic Testing, 2003

On the consistency of the minimum evolution principle of phylogenetic inference.
Discrete Applied Mathematics, 2003

2002
Fast and Accurate Phylogeny Reconstruction Algorithms Based on the Minimum-Evolution Principle.
Journal of Computational Biology, 2002

An efficient and accurate distance based algorithm to reconstruct tandem duplication trees.
Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002

2001
Hidden Markov Models with Patterns to Learn Boolean Vector Sequences and Application to the Built-In Self-Test for Integrated Circuits.
IEEE Trans. Pattern Anal. Mach. Intell., 2001

2000
Inferring evolutionary trees with strong combinatorial evidence.
Theor. Comput. Sci., 2000

Data Model and Classification by Trees: The Minimum Variance Reduction (MVR) Method.
J. Classification, 2000

Hidden Markov and Independence Models with Patterns for Sequential BIST.
Proceedings of the 18th IEEE VLSI Test Symposium (VTS 2000), 30 April, 2000

Phylogenetic Reconstruction Algorithms Based on Weighted 4-Trees.
Proceedings of the Computational Biology, 2000

Hidden Markov Models with Patterns and Their Application to Integrated Circuit Testing.
Proceedings of the Machine Learning: ECML 2000, 11th European Conference on Machine Learning, Barcelona, Catalonia, Spain, May 31, 2000

1998
Twelve Numerical, Symbolic and Hybrid Supervised Classification Methods.
IJPRAI, 1998

1996
Negative Robust Learning Results from Horn Claus Programs.
Proceedings of the Machine Learning, 1996

Concerning the NJ algorithm and its unweighted version, UNJ.
Proceedings of the Mathematical Hierarchies and Biology, 1996

1995
On Learning Decision Committees.
Proceedings of the Machine Learning, 1995

1994
Learning from Recursive, Tree Structured Examples.
Proceedings of the Machine Learning: ECML-94, 1994

1993
Commentaires sur une histoire de discrétisation.
Modulad, 1993

SDL, A Stochastic Algorithm for Learning Decision Lists with Limited Complexity.
Ann. Math. Artif. Intell., 1993

1992
Distribution-free performance bounds with the resubstitution error estimate.
Pattern Recognition Letters, 1992

Statistical Significance in Inductive Learning.
Proceedings of the 10th European Conference on Artificial Intelligence, 1992

1988
A simple method for predicting the secondary structure of globular proteins: implications and accuracy.
Computer Applications in the Biosciences, 1988

Data Analysis Using a Learning Program, a Case Study: An Application of PLAGE to a Biological Sequence Analysis.
Proceedings of the 8th European Conference on Artificial Intelligence, 1988


  Loading...