Olivier Gascuel

According to our database1, Olivier Gascuel authored at least 59 papers between 1988 and 2021.

Collaborative distances:



In proceedings 
PhD thesis 


On csauthors.net:


COVID-Align: accurate online alignment of hCoV-19 genomes using a profile HMM.
Bioinform., 2021

Incorporating alignment uncertainty into Felsenstein's phylogenetic bootstrap to improve its reliability.
Bioinform., 2021

NGPhylogeny.fr: new generation phylogenetic services for non-specialists.
Nucleic Acids Res., 2019

Accounting for ambiguity in ancestral sequence reconstruction.
Bioinform., 2019

Rapidly Computing the Phylogenetic Transfer Index.
Proceedings of the 19th International Workshop on Algorithms in Bioinformatics, 2019

Improving pairwise comparison of protein sequences with domain co-occurrence.
PLoS Comput. Biol., 2018

Renewing Felsenstein's phylogenetic bootstrap in the era of big data.
Nat., 2018

Inferring epidemiological parameters from phylogenies using regression-ABC: A comparative study.
PLoS Comput. Biol., 2017

Distance-Based Phylogeny Reconstruction: Safety and Edge Radius.
Encyclopedia of Algorithms, 2016

Fast and accurate branch lengths estimation for phylogenomic trees.
BMC Bioinform., 2016

A 'Stochastic Safety Radius' for Distance-Based Tree Reconstruction.
Algorithmica, 2016

TCS: a web server for multiple sequence alignment evaluation and phylogenetic reconstruction.
Nucleic Acids Res., 2015

FastMG: a simple, fast, and accurate maximum likelihood procedure to estimate amino acid replacement rate matrices from large data sets.
BMC Bioinform., 2014

Searching for virus phylotypes.
Bioinform., 2013

The Behavior of Admixed Populations in Neighbor-Joining Inference of Population Trees.
Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013

Fitting hidden Markov models of protein domains to a target species: application to Plasmodium falciparum.
BMC Bioinform., 2012

Enhancing Protein Domain Detection Using Domain Co-occurrence and Domain Exclusion.
Proceedings of the 23rd International Workshop on Database and Expert Systems Applications, 2012

ReplacementMatrix: a web server for maximum-likelihood estimation of amino acid replacement rate matrices.
Bioinform., 2011

Consistency of Topological Moves Based on the Balanced Minimum Evolution Principle of Phylogenetic Inference.
IEEE ACM Trans. Comput. Biol. Bioinform., 2009

Detection of new protein domains using co-occurrence: application to <i>Plasmodium falciparum</i>.
Bioinform., 2009

Distance-Based Phylogeny Reconstruction (Optimal Radius).
Proceedings of the Encyclopedia of Algorithms - 2008 Edition, 2008

Phylogeny.fr: robust phylogenetic analysis for the non-specialist.
Nucleic Acids Res., 2008

Fast NJ-like algorithms to deal with incomplete distance matrices.
BMC Bioinform., 2008

PlasmoDraft: a database of <i>Plasmodium falciparum </i>gene function predictions based on postgenomic data.
BMC Bioinform., 2008

Empirical profile mixture models for phylogenetic reconstruction.
Bioinform., 2008

Using repeated measurements to validate hierarchical gene clusters.
Bioinform., 2008

Duplication and Inversion History of a Tandemly Repeated Genes Family.
J. Comput. Biol., 2007

Reconstructing the duplication history of tandemly repeated sequences.
Proceedings of the Mathematics of Evolution and Phylogeny., 2007

The minimum evolution distance-based approach of phylogenetic inference.
Proceedings of the Mathematics of Evolution and Phylogeny., 2007

A simple method to predict protein-binding from aligned sequences - application to MHC superfamily and ß2-microglobulin.
Bioinform., 2006

Evolution of Tandemly Repeated Sequences Through Duplication and Inversion.
Proceedings of the Comparative Genomics, 2006

Topological Rearrangements and Local Search Method for Tandem Duplication Trees.
IEEE ACM Trans. Comput. Biol. Bioinform., 2005

PHYML Online - a web server for fast maximum likelihood-based phylogenetic inference.
Nucleic Acids Res., 2005

An exact and polynomial distance-based algorithm to reconstruct single copy tandem duplication trees.
J. Discrete Algorithms, 2005

Improving the efficiency of SPR moves in phylogenetic tree search methods based on maximum likelihood.
Bioinform., 2005

Discrimination of yeast genes involved in methionine and phosphate metabolism on the basis of upstream motifs.
Bioinform., 2005

Performance Analysis of Hierarchical Clustering Algorithms.
J. Classif., 2004

A Ring Architecture Strategy for BIST Test Pattern Generation.
J. Electron. Test., 2003

On the consistency of the minimum evolution principle of phylogenetic inference.
Discret. Appl. Math., 2003

Fast and Accurate Phylogeny Reconstruction Algorithms Based on the Minimum-Evolution Principle.
J. Comput. Biol., 2002

An efficient and accurate distance based algorithm to reconstruct tandem duplication trees.
Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002

Hidden Markov Models with Patterns to Learn Boolean Vector Sequences and Application to the Built-In Self-Test for Integrated Circuits.
IEEE Trans. Pattern Anal. Mach. Intell., 2001

Inferring evolutionary trees with strong combinatorial evidence.
Theor. Comput. Sci., 2000

Data Model and Classification by Trees: The Minimum Variance Reduction (MVR) Method.
J. Classif., 2000

Hidden Markov and Independence Models with Patterns for Sequential BIST.
Proceedings of the 18th IEEE VLSI Test Symposium (VTS 2000), 30 April, 2000

Phylogenetic Reconstruction Algorithms Based on Weighted 4-Trees.
Proceedings of the Computational Biology, 2000

Hidden Markov Models with Patterns and Their Application to Integrated Circuit Testing.
Proceedings of the Machine Learning: ECML 2000, 11th European Conference on Machine Learning, Barcelona, Catalonia, Spain, May 31, 2000

On calculating efficient LFSR seeds for built-in self test.
Proceedings of the 4th European Test Workshop, 1999

Twelve Numerical, Symbolic and Hybrid Supervised Classification Methods.
Int. J. Pattern Recognit. Artif. Intell., 1998

Negative Robust Learning Results from Horn Claus Programs.
Proceedings of the Machine Learning, 1996

Concerning the NJ algorithm and its unweighted version, UNJ.
Proceedings of the Mathematical Hierarchies and Biology, 1996

On Learning Decision Committees.
Proceedings of the Machine Learning, 1995

Learning from Recursive, Tree Structured Examples.
Proceedings of the Machine Learning: ECML-94, 1994

Commentaires sur une histoire de discrétisation.
Monde des Util. Anal. Données, 1993

SDL, A Stochastic Algorithm for Learning Decision Lists with Limited Complexity.
Ann. Math. Artif. Intell., 1993

Distribution-free performance bounds with the resubstitution error estimate.
Pattern Recognit. Lett., 1992

Statistical Significance in Inductive Learning.
Proceedings of the 10th European Conference on Artificial Intelligence, 1992

A simple method for predicting the secondary structure of globular proteins: implications and accuracy.
Comput. Appl. Biosci., 1988

Data Analysis Using a Learning Program, a Case Study: An Application of PLAGE to a Biological Sequence Analysis.
Proceedings of the 8th European Conference on Artificial Intelligence, 1988