Patrick Ray

According to our database, Patrick Ray authored at least 12 papers between 2013 and 2025.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2025

STRUCTSENSE: A Task-Agnostic Agentic Framework for Structured Information Extraction with Human-In-The-Loop Evaluation and Benchmarking.

Tek Raj Chhetri, Yibei Chen, Puja Trivedi, Dorota Jarecka, Saif Haobsh, Patrick Ray, Lydia Ng, Satrajit S. Ghosh

CoRR, July, 2025

The Cell Ontology in the age of single-cell omics.

Shawn Zheng Kai Tan, Aleix Puig-Barbe, Damien Goutte-Gattat, Caroline Eastwood, Brian D. Aevermann, Alida Avola, James P. Balhoff, Ismail Ugur Bayindir, Jasmine Belfiore, Anita R. Caron, David S. Fischer, Nancy George, Benjamin M. Gyori, Melissa A. Haendel, Charles Tapley Hoyt, Hüseyin Kir, Tiago Lubiana, Nicolas Matentzoglu, James A. Overton, Beverly Peng, Bjoern Peters, Ellen M. Quardokus, Patrick L. Ray, Paola Roncaglia, Andrea D. Rivera, Raymund Stefancsik, Wei Kheng Teh, Sabrina Toro, Nicole A. Vasilevsky, Chuan Xu, Yun Zhang, Richard H. Scheuermann, Christopher J. Mungall, Alexander D. Diehl, David Osumi-Sutherland

CoRR, June, 2025

Bridging the Scientific Knowledge Gap and Reproducibility: A Survey of Provenance, Assertion and Evidence Ontologies.

Tek Raj Chhetri, Yaroslav O. Halchenko, Dorota Jarecka, Puja Trivedi, Satrajit S. Ghosh, Patrick Ray, Lydia Ng

Proceedings of the Companion Proceedings of the ACM on Web Conference 2025, 2025

2022

Enabling dynamic emulation of high-dimensional model outputs: Demonstration for Mexico City groundwater management.

Jacob Tracy, Won Chang, Sarah St George Freeman, Casey Brown, Adriana Palma Nava, Patrick Ray

Environ. Model. Softw., 2022

Vulnerability assessment of drinking water supply under climate uncertainty using a river contamination risk (RANK) model.

Faranak Behzadi, Asphota Wasti, Todd E. Steissberg, Patrick Ray

Environ. Model. Softw., 2022

2017

A user-friendly software package for VIC hydrologic model development.

Sungwook Wi, Patrick Ray, Eleonora M. C. Demaria, Scott Steinschneider, Casey Brown

Environ. Model. Softw., 2017

2016

Representing vision and blindness.

Patrick L. Ray, Alexander P. Cox, Mark Jensen, Travis Allen, William D. Duncan, Alexander D. Diehl

J. Biomed. Semant., 2016

2014

The Ontological Treatment of Sight and Blindness.

Patrick Ray, Alexander P. Cox, Mark Jensen, Alexander D. Diehl

Proceedings of the 5th International Conference on Biomedical Ontology, 2014

An Ontological Representation and Analysis of Patient-reported and Clinical Outcomes for Multiple Sclerosis.

Mark Jensen, Alexander P. Cox, Patrick Ray, Barbara E. Teter, Bianca Weinstock-Guttman, Alan Ruttenberg, Alexander D. Diehl

Proceedings of the 5th International Conference on Biomedical Ontology, 2014

Applications of OBI 'assay'.

Mark Jensen, Alexander P. Cox, Jonathan P. Bona, William D. Duncan, Patrick L. Ray, Alexander D. Diehl

Proceedings of the 5th International Conference on Biomedical Ontology, 2014

2013

The neurological disease ontology.

Mark Jensen, Alexander P. Cox, Naveed Chaudhry, Marcus Ng, Donat Sule, William D. Duncan, Patrick Ray, Bianca Weinstock-Guttman, Barry Smith, Alan Ruttenberg, Kinga Szigeti, Alexander D. Diehl

J. Biomed. Semant., 2013

The Ocular Disease Ontology.

Patrick Ray, Alexander D. Diehl

Proceedings of the 4th International Conference on Biomedical Ontology, 2013