Nicolas Matentzoglu

Orcid: 0000-0002-7356-1779

According to our database1, Nicolas Matentzoglu authored at least 54 papers between 2013 and 2024.

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Bibliography

2024
Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning.
Bioinform., March, 2024

2023
The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond.
J. Biomed. Semant., December, 2023

COVoc and COVTriage: novel resources to support literature triage.
Bioinform., January, 2023

Ontologizing health systems data at scale: making translational discovery a reality.
npj Digit. Medicine, 2023

MapperGPT: Large Language Models for Linking and Mapping Entities.
CoRR, 2023

An Open-Source Knowledge Graph Ecosystem for the Life Sciences.
CoRR, 2023

KG-Hub - Building and Exchanging Biological Knowledge Graphs.
CoRR, 2023

A simple standard for ontological mappings 2023: updates on data model, collaborations and tooling.
Proceedings of the 18th International Workshop on Ontology Matching co-located with the 22nd International Semantic Web Conference (ISWC 2023), 2023

2022
Ontologizing Health Systems Data at Scale: Making Translational Discovery a Reality.
CoRR, 2022

Ontology Development Kit: a toolkit for building, maintaining, and standardising biomedical ontologies.
CoRR, 2022

The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development.
BMC Bioinform., 2022

Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies.
Database J. Biol. Databases Curation, 2022

A Simple Standard for Sharing Ontological Mappings (SSSOM).
Database J. Biol. Databases Curation, 2022

What should be the minimum requirements for making FAIR ontology alignments?
Proceedings of the 17th International Workshop on Ontology Matching (OM 2022) co-located with the 21th International Semantic Web Conference (ISWC 2022), 2022

A simple standard for ontological mappings 2022: updates of data model and outlook.
Proceedings of the 17th International Workshop on Ontology Matching (OM 2022) co-located with the 21th International Semantic Web Conference (ISWC 2022), 2022

2021
A comparative study of methods for a priori prediction of MCQ difficulty.
Semantic Web, 2021

KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response.
Patterns, 2021

The Human Phenotype Ontology in 2021.
Nucleic Acids Res., 2021

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.
Database J. Biol. Databases Curation, 2021

Reclassification of Infectious Disease in the Mondo Disease Ontology.
Proceedings of the International Conference on Biomedical Ontologies 2021 co-located with the Workshop on Ontologies for the Behavioural and Social Sciences (OntoBess 2021) as part of the Bolzano Summer of Knowledge (BOSK 2021), 2021

A Semantic Model Leveraging Pattern-based Ontology Terms to Bridge Environmental Exposures and Health Outcomes.
Proceedings of the International Conference on Biomedical Ontologies 2021 co-located with the Workshop on Ontologies for the Behavioural and Social Sciences (OntoBess 2021) as part of the Bolzano Summer of Knowledge (BOSK 2021), 2021

2020
A systematic survey of temporal requirements of bio-health ontologies.
Semantic Web, 2020

The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species.
Nucleic Acids Res., 2020

Mondo Disease Ontology: Harmonizing Disease Concepts Across the World (short paper).
Proceedings of the 11th International Conference on Biomedical Ontologies (ICBO) joint with the 10th Workshop on Ontologies and Data in Life Sciences (ODLS) and part of the Bolzano Summer of Knowledge (BoSK 2020), 2020

2019
Comparing ontology authoring workflows with Protégé: In the laboratory, in the tutorial and in the 'wild'.
J. Web Semant., 2019

Measuring expert performance at manually classifying domain entities under upper ontology classes.
J. Web Semant., 2019

Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources.
Nucleic Acids Res., 2019

Representing glycophenotypes: semantic unification of glycobiology resources for disease discovery.
Database J. Biol. Databases Curation, 2019

Ontology-Based Generation of Medical, Multi-term MCQs.
Int. J. Artif. Intell. Educ., 2019

Where Does an Ontology Start?
Proceedings of the 10th International Conference on Biomedical Ontology (ICBO 2019), Buffalo, New York, USA, July 30, 2019

Medical Action Ontology (MAxO).
Proceedings of the 10th International Conference on Biomedical Ontology (ICBO 2019), Buffalo, New York, USA, July 30, 2019

2018
Inference Inspector: Improving the verification of ontology authoring actions.
J. Web Semant., 2018

OWL Reasoning: Subsumption Test Hardness and Modularity.
J. Autom. Reason., 2018

MIRO: guidelines for minimum information for the reporting of an ontology.
J. Biomed. Semant., 2018

Reconciling Ontology Definitions using the Ontology Pattern Reconciliation Workbench and the DOSDP Framework.
Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), 2018

2017
The OWL Reasoner Evaluation (ORE) 2015 Competition Report.
J. Autom. Reason., 2017

2016
Module-based classification of OWL ontologies.
PhD thesis, 2016

The OWL Reasoner Evaluation (ORE) 2015 Resources.
Proceedings of the Semantic Web - ISWC 2016, 2016

Understanding Author Intentions: Test Driven Knowledge Graph Construction.
Proceedings of the Reasoning Web: Logical Foundation of Knowledge Graph Construction and Query Answering, 2016

Making Entailment Set Changes Explicit Improves the Understanding of Consequences of Ontology Authoring Actions.
Proceedings of the Knowledge Engineering and Knowledge Management, 2016

2015
A Multi-reasoner, Justification-Based Approach to Reasoner Correctness.
Proceedings of the Semantic Web - ISWC 2015, 2015

A Survey of Current, Stand-alone OWL Reasoners.
Proceedings of the Informal Proceedings of the 4th International Workshop on OWL Reasoner Evaluation (ORE-2015) co-located with the 28th International Workshop on Description Logics (DL 2015), 2015

Verifying Reasoner Correctness - A Justication Based Method.
Proceedings of the Informal Proceedings of the 4th International Workshop on OWL Reasoner Evaluation (ORE-2015) co-located with the 28th International Workshop on Description Logics (DL 2015), 2015

Empirical Investigation of Subsumption Test Hardness in Description Logic Classification.
Proceedings of the 28th International Workshop on Description Logics, 2015

2014
The Manchester OWL Repository: System Description.
Proceedings of the ISWC 2014 Posters & Demonstrations Track a track within the 13th International Semantic Web Conference, 2014

The OWL Full/DL Gap in the Field.
Proceedings of the 11th International Workshop on OWL: Experiences and Directions (OWLED 2014) co-located with 13th International Semantic Web Conference on (ISWC 2014), 2014

OWL/ZIP: Distributing Large and Modular Ontologies.
Proceedings of the 11th International Workshop on OWL: Experiences and Directions (OWLED 2014) co-located with 13th International Semantic Web Conference on (ISWC 2014), 2014

A Family History Knowledge Base in OWL 2.
Proceedings of the Informal Proceedings of the 3rd International Workshop on OWL Reasoner Evaluation (ORE 2014) co-located with the Vienna Summer of Logic (VSL 2014), 2014

An Empirical Investigation of Difficulty of Subsets of Description Logic Ontologies.
Proceedings of the Informal Proceedings of the 27th International Workshop on Description Logics, 2014

Computable Declarative Representation of Clinical Assessment Scales in EHRs.
Proceedings of the 2014 IEEE 27th International Symposium on Computer-Based Medical Systems, 2014

2013
A Snapshot of the OWL Web.
Proceedings of the Semantic Web - ISWC 2013, 2013

The Empirical Robustness of Description Logic Classification.
Proceedings of the ISWC 2013 Posters & Demonstrations Track, 2013

OWL Reasoner Evaluation (ORE) Workshop 2013 Results: Short Report.
Proceedings of the Informal Proceedings of the 2nd International Workshop on OWL Reasoner Evaluation (ORE-2013), 2013

A Corpus of OWL DL Ontologies.
Proceedings of the Informal Proceedings of the 26th International Workshop on Description Logics, Ulm, Germany, July 23, 2013


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