Pavel P. Kuksa

According to our database1, Pavel P. Kuksa authored at least 21 papers between 2007 and 2016.

Collaborative distances:



In proceedings 
PhD thesis 




DASHR: database of small human noncoding RNAs.
Nucleic Acids Research, 2016

High-order neural networks and kernel methods for peptide-MHC binding prediction.
Bioinformatics, 2015

HIPPIE: a high-throughput identification pipeline for promoter interacting enhancer elements.
Bioinformatics, 2015

Biological Sequence Classification with Multivariate String Kernels.
IEEE/ACM Trans. Comput. Biology Bioinform., 2013

Generalized Similarity Kernels for Efficient Sequence Classification.
Proceedings of the Twelfth SIAM International Conference on Data Mining, 2012

Efficient evaluation of large sequence kernels.
Proceedings of the 18th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2012

2D similarity kernels for biological sequence classification.
Proceedings of the 11th International Workshop on Data Mining in Bioinformatics, 2012

Natural Language Processing (Almost) from Scratch.
Journal of Machine Learning Research, 2011

Efficient motif finding algorithms for large-alphabet inputs.
BMC Bioinformatics, 2010

Semi-supervised Bio-named Entity Recognition with Word-Codebook Learning.
Proceedings of the SIAM International Conference on Data Mining, 2010

Semi-supervised Abstraction-Augmented String Kernel for Multi-level Bio-Relation Extraction.
Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2010

Spatial Representation for Efficient Sequence Classification.
Proceedings of the 20th International Conference on Pattern Recognition, 2010

Efficient alignment-free DNA barcode analytics.
BMC Bioinformatics, 2009

Efficient use of unlabeled data for protein sequence classification: a comparative study.
BMC Bioinformatics, 2009

Semi-Supervised Sequence Labeling with Self-Learned Features.
Proceedings of the ICDM 2009, 2009

Combining labeled and unlabeled data with word-class distribution learning.
Proceedings of the 18th ACM Conference on Information and Knowledge Management, 2009

Fast Motif Selection for Biological Sequences.
Proceedings of the 2009 IEEE International Conference on Bioinformatics and Biomedicine, 2009

Scalable Algorithms for String Kernels with Inexact Matching.
Proceedings of the Advances in Neural Information Processing Systems 21, 2008

Fast protein homology and fold detection with sparse spatial sample kernels.
Proceedings of the 19th International Conference on Pattern Recognition (ICPR 2008), 2008

On the Role of Local Matching for Efficient Semi-supervised Protein Sequence Classification.
Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

Fast Kernel Methods for SVM Sequence Classifiers.
Proceedings of the Algorithms in Bioinformatics, 7th International Workshop, 2007