Li-San Wang

Affiliations:
  • University of Pennsylvania, Philadelphia, USA


According to our database1, Li-San Wang authored at least 42 papers between 2000 and 2023.

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Bibliography

2023
hipFG: high-throughput harmonization and integration pipeline for functional genomics data.
Bioinform., November, 2023

2022
Omnibus and robust deconvolution scheme for bulk RNA sequencing data integrating multiple single-cell reference sets and prior biological knowledge.
Bioinform., 2022

2020
SparkINFERNO: a scalable high-throughput pipeline for inferring molecular mechanisms of non-coding genetic variants.
Bioinform., 2020

2019
VCPA: genomic variant calling pipeline and data management tool for Alzheimer's Disease Sequencing Project.
Bioinform., 2019

VCPA: genomic variant calling pipeline and data management tool for Alzheimer's Disease Sequencing Project.
Bioinform., 2019

DASHR 2.0: integrated database of human small non-coding RNA genes and mature products.
Bioinform., 2019

2018
SPAR: small RNA-seq portal for analysis of sequencing experiments.
Nucleic Acids Res., 2018

Integrative DNA copy number detection and genotyping from sequencing and array-based platforms.
Bioinform., 2018

Functional annotation of genomic variants in studies of late-onset Alzheimer's disease.
Bioinform., 2018

2016
DASHR: database of small human noncoding RNAs.
Nucleic Acids Res., 2016

A comprehensive database of high-throughput sequencing-based RNA secondary structure probing data (Structure Surfer).
BMC Bioinform., 2016

2015
PASTA: Ultra-Large Multiple Sequence Alignment for Nucleotide and Amino-Acid Sequences.
J. Comput. Biol., 2015

HIPPIE: a high-throughput identification pipeline for promoter interacting enhancer elements.
Bioinform., 2015

2013
DRAW+SneakPeek: Analysis workflow and quality metric management for DNA-seq experiments.
Bioinform., 2013

2012
SAVoR: a server for sequencing annotation and visualization of RNA structures.
Nucleic Acids Res., 2012

DACTAL: divide-and-conquer trees (almost) without alignments.
Bioinform., 2012

2011
The Impact of Multiple Protein Sequence Alignment on Phylogenetic Estimation.
IEEE ACM Trans. Comput. Biol. Bioinform., 2011

Invited: Multiclass RNA function classification using next-generation sequencing.
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

2010
Correcting population stratification in genetic association studies using a phylogenetic approach.
Bioinform., 2010

2009
A Bayesian approach to efficient differential allocation for resampling-based significance testing.
BMC Bioinform., 2009

2007
Distance-based genome rearrangement phylogeny.
Proceedings of the Mathematics of Evolution and Phylogeny., 2007

2006
Reconstructing Chromosomal Evolution.
SIAM J. Comput., 2006

Weighted isotonic regression under the <i>L</i><sub>1</sub> norm.
Proceedings of the Seventeenth Annual ACM-SIAM Symposium on Discrete Algorithms, 2006

Dense subgraph computation via stochastic search: application to detect transcriptional modules.
Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006

Transcriptional Target Prediction Using Qualitative Reasoning.
Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006

2005
Phylogenetic Networks: Properties and Relationship to Trees and Clusters.
Trans. Comp. Sys. Biology, 2005

An Interaction-Dependent Model for Transcription Factor Binding.
Proceedings of the Systems Biology and Regulatory Genomics, 2005

Enhanced position weight matrices using mixture models.
Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005

Phylogenetic Networks, Trees, and Clusters.
Proceedings of the Computational Science, 2005

RIATA-HGT: A Fast and Accurate Heuristic for Reconstructing Horizontal Gene Transfer.
Proceedings of the Computing and Combinatorics, 11th Annual International Conference, 2005

Improving Genome Rearrangement Phylogeny Using Sequence-Style Parsimony.
Proceedings of the Fifth IEEE International Symposium on Bioinformatic and Bioengineering (BIBE 2005), 2005

2004
Genome Identification and Classification by Short Oligo Arrays.
Proceedings of the Algorithms in Bioinformatics, 4th International Workshop, 2004

2003
Analyzing the Order of Items in Manuscripts of <i>The Canterbury Tales</i>.
Comput. Humanit., 2003

2002
Steps toward accurate reconstructions of phylogenies from gene-order data.
J. Comput. Syst. Sci., 2002

Toward New Software for Computational Phylogenetics.
Computer, 2002

Genome Rearrangement Phylogeny Using Weighbor.
Proceedings of the Algorithms in Bioinformatics, Second International Workshop, 2002

Fast Phylogenetic Methods for the Analysis of Genome Rearrangement Data: An Empirical Study.
Proceedings of the 7th Pacific Symposium on Biocomputing, 2002

Statistically based postprocessing of phylogenetic analysis by clustering.
Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002

2001
Exact-IEBP: A New Technique for Estimating Evolutionary Distances between Whole Genomes.
Proceedings of the Algorithms in Bioinformatics, First International Workshop, 2001

Estimating true evolutionary distances between genomes.
Proceedings of the Proceedings on 33rd Annual ACM Symposium on Theory of Computing, 2001

New approaches for reconstructing phylogenies from gene order data.
Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology, 2001

2000
A New Fast Heuristic for Computing the Breakpoint Phylogeny and Experimental Phylogenetic Analyses of Real and Synthetic Data.
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000


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