Pei Fen Kuan

According to our database, Pei Fen Kuan authored at least 12 papers between 2008 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

Efficient gradient boosting for prognostic biomarker discovery.

Kaiqiao Li, Sijie Yao, Zhenyu Zhang, Biwei Cao, Christopher M. Wilson, Denise Kalos, Pei Fen Kuan, Ruoqing Zhu, Xuefeng Wang

Bioinform., 2022

A systematic assessment of cell type deconvolution algorithms for DNA methylation data.

Junyan Song, Pei Fen Kuan

Briefings Bioinform., 2022

2021

Fenchel duality of Cox partial likelihood with an application in survival kernel learning.

Christopher M. Wilson, Kaiqiao Li, Qiang Sun, Pei Fen Kuan, Xuefeng Wang

Artif. Intell. Medicine, 2021

2020

Negative binomial additive model for RNA-Seq data analysis.

Xu Ren, Pei Fen Kuan

BMC Bioinform., 2020

2019

Multiple-kernel learning for genomic data mining and prediction.

Christopher M. Wilson, Kaiqiao Li, Xiaoqing Yu, Pei Fen Kuan, Xuefeng Wang

BMC Bioinform., 2019

methylGSA: a Bioconductor package and Shiny app for DNA methylation data length bias adjustment in gene set testing.

Xu Ren, Pei Fen Kuan

Bioinform., 2019

2017

A systematic evaluation of nucleotide properties for CRISPR sgRNA design.

Pei Fen Kuan, R. Scott Powers, Shuyao He, Kaiqiao Li, Xiaoyu Zhao, Bo Huang

BMC Bioinform., 2017

methylDMV: Simultaneous Detection of Differential DNA Methylation and Variability with Confounder Adjustment.

Pei Fen Kuan, Junyan Song, Shuyao He

Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017

2011

Discovering Transcription Factor Binding Sites in Highly Repetitive Regions of Genomes with Multi-Read Analysis of ChIP-Seq Data.

Dongjun Chung, Pei Fen Kuan, Bo Li, Rajendran Sanalkumar, Kun Liang, Emery H. Bresnick, Colin N. Dewey, Sündüz Keles

PLoS Comput. Biol., 2011

2010

Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data.

Benedikt Zacher, Pei Fen Kuan, Achim Tresch

BMC Bioinform., 2010

A statistical framework for Illumina DNA methylation arrays.

Pei Fen Kuan, Sijian Wang, Xin Zhou, Haitao Chu

Bioinform., 2010

2008

CMARRT: A Tool of Analysis of CHIP-chip Data from Tiling Arrays by Incorporating the Correlation Structure.

Pei Fen Kuan, Hyonho Chun, Sündüz Keles

Proceedings of the Biocomputing 2008, 2008