Philip Hugenholtz

According to our database1, Philip Hugenholtz authored at least 16 papers between 2004 and 2022.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Other 

Links

Online presence:

On csauthors.net:

Bibliography

2022
GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy.
Nucleic Acids Res., 2022

2020
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database.
Bioinform., 2020

2014
STAMP: statistical analysis of taxonomic and functional profiles.
Bioinform., 2014

2013
Shining a Light on Dark Sequencing: Characterising Errors in Ion Torrent PGM Data.
PLoS Comput. Biol., 2013

2010
The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata.
Nucleic Acids Res., 2010

2009
ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes.
Bioinform., 2009

2008
IMG/M: a data management and analysis system for metagenomes.
Nucleic Acids Res., 2008

Annotation of metagenome short reads using proxygenes.
Proceedings of the ECCB'08 Proceedings, 2008

2007
Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool.
BMC Bioinform., 2007

CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats.
BMC Bioinform., 2007

2006
The integrated microbial genomes (IMG) system.
Nucleic Acids Res., 2006

The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide.
Nucleic Acids Res., 2006

NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes.
Nucleic Acids Res., 2006

An experimental metagenome data management and analysis system.
Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006

2005
SNP-VISTA: An interactive SNP visualization tool.
BMC Bioinform., 2005

2004
Bellerophon: a program to detect chimeric sequences in multiple sequence alignments.
Bioinform., 2004


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