Victor M. Markowitz

According to our database, Victor M. Markowitz authored at least 61 papers between 1983 and 2017.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2017

IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses.

David Páez-Espino, I-Min A. Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, Ernest Szeto, Manoj Pillay, Jinghua Huang, Victor M. Markowitz, Torben Nielsen, Marcel Huntemann, T. B. K. Reddy, Georgios A. Pavlopoulos, Matthew B. Sullivan, Barbara J. Campbell, Feng Chen, Katherine D. McMahon, Steven J. Hallam, Vincent J. Denef, Ricardo Cavicchioli, Sean M. Caffrey, Wolfgang R. Streit, John Webster, Kim M. Handley, Ghasem H. Salekdeh, Nicolas Tsesmetzis, João C. Setubal, Phillip B. Pope, Wen-Tso Liu, Adam R. Rivers, Natalia Ivanova, Nikos Kyrpides

Nucleic Acids Res., 2017

IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes.

Michalis Hadjithomas, I-Min A. Chen, Ken Chu, Jinghua Huang, Anna Ratner, Krishna Palaniappan, Evan Andersen, Victor M. Markowitz, Nikos Kyrpides, Natalia Ivanova

Nucleic Acids Res., 2017

IMG/M: integrated genome and metagenome comparative data analysis system.

I-Min A. Chen, Victor M. Markowitz, Ken Chu, Krishna Palaniappan, Ernest Szeto, Manoj Pillay, Anna Ratner, Jinghua Huang, Evan Andersen, Marcel Huntemann, Neha Varghese, Michalis Hadjithomas, Kristin Tennessen, Torben Nielsen, Natalia Ivanova, Nikos Kyrpides

Nucleic Acids Res., 2017

2014

IMG 4 version of the integrated microbial genomes comparative analysis system.

Victor M. Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Manoj Pillay, Anna Ratner, Jinghua Huang, Tanja Woyke, Marcel Huntemann, Iain Anderson, Konstantinos Billis, Neha Varghese, Konstantinos Mavrommatis, Amrita Pati, Natalia Ivanova, Nikos Kyrpides

Nucleic Acids Res., 2014

IMG/M 4 version of the integrated metagenome comparative analysis system.

Victor M. Markowitz, I-Min A. Chen, Ken Chu, Ernest Szeto, Krishna Palaniappan, Manoj Pillay, Anna Ratner, Jinghua Huang, Ioanna Pagani, Susannah Tringe, Marcel Huntemann, Konstantinos Billis, Neha Varghese, Kristin Tennessen, Konstantinos Mavrommatis, Amrita Pati, Natalia Ivanova, Nikos Kyrpides

Nucleic Acids Res., 2014

Maintaining a microbial genome & metagenome data analysis system in an academic setting.

I-Min A. Chen, Victor M. Markowitz, Ernest Szeto, Krishna Palaniappan, Ken Chu

Proceedings of the Conference on Scientific and Statistical Database Management, 2014

2013

Accelerating gene context analysis using bitmaps.

Alexandru Romosan, Arie Shoshani, Kesheng Wu, Victor M. Markowitz, Konstantinos Mavrommatis

Proceedings of the Conference on Scientific and Statistical Database Management, 2013

2012

The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata.

Ioanna Pagani, Konstantinos Liolios, Jakob Jansson, I-Min A. Chen, Tatyana Smirnova, Bahador Nosrat, Victor M. Markowitz, Nikos Kyrpides

Nucleic Acids Res., 2012

IMG: the integrated microbial genomes database and comparative analysis system.

Victor M. Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Yuri Grechkin, Anna Ratner, Biju Jacob, Jinghua Huang, Peter Williams, Marcel Huntemann, Iain Anderson, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides

Nucleic Acids Res., 2012

IMG/M: the integrated metagenome data management and comparative analysis system.

Victor M. Markowitz, I-Min A. Chen, Ken Chu, Ernest Szeto, Krishna Palaniappan, Yuri Grechkin, Anna Ratner, Biju Jacob, Amrita Pati, Marcel Huntemann, Konstantinos Liolios, Ioanna Pagani, Iain Anderson, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides

Nucleic Acids Res., 2012

2010

The integrated microbial genomes system: an expanding comparative analysis resource.

Victor M. Markowitz, I-Min A. Chen, Krishna Palaniappan, Ken Chu, Ernest Szeto, Yuri Grechkin, Anna Ratner, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides

Nucleic Acids Res., 2010

The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata.

Konstantinos Liolios, I-Min A. Chen, Konstantinos Mavrommatis, Nektarios Tavernarakis, Philip Hugenholtz, Victor M. Markowitz, Nikos Kyrpides

Nucleic Acids Res., 2010

2009

IMG ER: a system for microbial genome annotation expert review and curation.

Victor M. Markowitz, Konstantinos Mavrommatis, Natalia Ivanova, I-Min A. Chen, Ken Chu, Nikos Kyrpides

Bioinform., 2009

A Statistical Framework for the Functional Analysis of Metagenomes.

Itai Sharon, Amrita Pati, Victor M. Markowitz, Ron Y. Pinter

Proceedings of the Research in Computational Molecular Biology, 2009

2008

The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions.

Victor M. Markowitz, Ernest Szeto, Krishna Palaniappan, Yuri Grechkin, Ken Chu, I-Min A. Chen, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides

Nucleic Acids Res., 2008

IMG/M: a data management and analysis system for metagenomes.

Victor M. Markowitz, Natalia Ivanova, Ernest Szeto, Krishna Palaniappan, Ken Chu, Daniel Dalevi, I-Min A. Chen, Yuri Grechkin, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Philip Hugenholtz, Nikos Kyrpides

Nucleic Acids Res., 2008

Annotation of metagenome short reads using proxygenes.

Daniel Dalevi, Natalia Ivanova, Konstantinos Mavrommatis, Sean D. Hooper, Ernest Szeto, Philip Hugenholtz, Nikos Kyrpides, Victor M. Markowitz

Proceedings of the ECCB'08 Proceedings, 2008

2007

Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool.

Daniel Dalevi, Todd Z. DeSantis, Jakob Fredslund, Gary L. Andersen, Victor M. Markowitz, Philip Hugenholtz

BMC Bioinform., 2007

2006

The integrated microbial genomes (IMG) system.

Victor M. Markowitz, Frank Korzeniewski, Krishna Palaniappan, Ernest Szeto, Greg Werner, Anu Padki, Xueling Zhao, Inna Dubchak, Philip Hugenholtz, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides

Nucleic Acids Res., 2006

An experimental metagenome data management and analysis system.

Victor M. Markowitz, Natalia Ivanova, Krishna Palaniappan, Ernest Szeto, Frank Korzeniewski, Athanasios Lykidis, Iain Anderson, Konstantinos Mavrommatis, Victor Kunin, Héctor García Martín, Inna Dubchak, Philip Hugenholtz, Nikos Kyrpides

Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006

An Application Driven Perspective on Biological Data Integration.

Victor M. Markowitz

Proceedings of the Data Integration in the Life Sciences, Third International Workshop, 2006

2005

The Integrated Microbial Genomes (IMG) System: A Case Study in Biological Data Management.

Victor M. Markowitz, Frank Korzeniewski, Krishna Palaniappan, Ernest Szeto, Natalia Ivanova, Nikos Kyrpides

Proceedings of the 31st International Conference on Very Large Data Bases, Trondheim, Norway, August 30, 2005

2004

Biological Data Management: Research, Practice and Opportunities.

Thodoros Topaloglou, Susan B. Davidson, H. V. Jagadish, Victor M. Markowitz, Evan W. Steeg, Mike Tyers

Proceedings of the (e)Proceedings of the Thirtieth International Conference on Very Large Data Bases, VLDB 2004, Toronto, Canada, August 31, 2004

2003

Data Management Challenges for Molecular and Cell Biology: An Industry Perspective.

Victor M. Markowitz

OMICS, 2003

Integration Challenges in Gene Expression Data Management.

Victor M. Markowitz, John Campbell, I-Min A. Chen, Anthony Kosky, Krishna Palaniappan, Thodoros Topaloglou

Proceedings of the Bioinformatics, 2003

2002

Gene Expression Data Management: A Case Study.

Victor M. Markowitz, I-Min A. Chen, Anthony Kosky

Proceedings of the Advances in Database Technology, 2002

2001

Applying Data Warehousing Concepts to Gene Expression Data Management.

Victor M. Markowitz, Thodoros Topaloglou

Proceedings of the 2nd IEEE International Symposium on Bioinformatics and Bioengineering, 2001

1999

Seamless Integration of Biological Applications within a Database Framework.

Thodoros Topaloglou, Anthony Kosky, Victor M. Markowitz

Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, 1999

1998

Advanced Query Mechanisms for Biological Databases.

I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto, Thodoros Topaloglou

Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28, 1998

Exploring Heterogeneous Biological Databases: Tools and Applications.

Anthony Kosky, I-Min A. Chen, Victor M. Markowitz, Ernest Szeto

Proceedings of the Advances in Database Technology, 1998

1997

Constructing and Maintaining Scientific Database Views in the Framework of the Object-Protocol Model.

I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto

Proceedings of the Ninth International Conference on Scientific and Statistical Database Management, 1997

Developing and Accessing Scientific Databases with the Object-Protocol (OPM) Data Management Tools

I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto

Proceedings of the Ninth International Conference on Scientific and Statistical Database Management, 1997

Developing and Accessing Scientific Databases with the OPM Data Management Tools.

I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto

Proceedings of the Thirteenth International Conference on Data Engineering, 1997

1996

Version Management for Scientific Databases.

I-Min A. Chen, Victor M. Markowitz, Stanley Letovsky, Peter Li, Kenneth H. Fasman

Proceedings of the Advances in Database Technology, 1996

1995

Characterizing Heterogeneous Molecular Biology Database Systems.

Victor M. Markowitz, Otto Ritter

J. Comput. Biol., 1995

Heterogeneous Molecular Biology Databases.

Victor M. Markowitz

J. Comput. Biol., 1995

An Overview of the Object-Protocol Model (OPM) and OPM Data Management Tools.

I-Min A. Chen, Victor M. Markowitz

Inf. Syst., 1995

Modeling Scientific Experiments with an Object Data Model.

I-Min A. Chen, Victor M. Markowitz

Proceedings of the Eleventh International Conference on Data Engineering, 1995

1994

Safe referential integrity and null constraint structures in relational databases.

Victor M. Markowitz

Inf. Syst., 1994

An Overview of the Lawrence Berkeley Laboratory Extended Entity-Relationship Database Tools.

Victor M. Markowitz, Arie Shoshani

Proceedings of the Entity-Relationship Approach, 1994

1993

Object Queries over Relational Databases: Language, Implementation, and Applications.

Victor M. Markowitz, Arie Shoshani

Proceedings of the Ninth International Conference on Data Engineering, 1993

Data Management Tools for Genomic Applications: A Progress Report.

Victor M. Markowitz, I-Min A. Chen

Proceedings of the Database and Expert Systems Applications, 4th International Conference, 1993

1992

Representing Extended Entity-Relationship Structures in Relational Databases: A Modular Approach.

Victor M. Markowitz, Arie Shoshani

ACM Trans. Database Syst., 1992

Data Management for Genomic Mapping Applications: A Case Study.

Victor M. Markowitz, Suzanna Lewis, John L. McCarthy, Frank Olken, Manfred Zorn

Proceedings of the 6th Int. Working Conf. on Scientific and Statistical Database Management, 1992

A Relation Merging Technique for Relational Databases.

Victor M. Markowitz

Proceedings of the Eighth International Conference on Data Engineering, 1992

1991

Safe Referential Integrity Structures in Relational Databases.

Victor M. Markowitz

Proceedings of the 17th International Conference on Very Large Data Bases, 1991

An Architecture for Identifying Objects in Multidatabases.

Victor M. Markowitz

Proceedings of the RIDE-IMS '91, 1991

Problems Underlying the Use of Referential Integrity in Relational Database Management Systems.

Victor M. Markowitz

Proceedings of the Seventh International Conference on Data Engineering, 1991

1990

Identifying Extended Entity-Relationship Object Structures in Relational Schemas.

Victor M. Markowitz, Johann A. Makowsky

IEEE Trans. Software Eng., 1990

Referential Integrity Revisited: An Object-Oriented Perspective.

Victor M. Markowitz

Proceedings of the 16th International Conference on Very Large Data Bases, 1990

Representing Processes in the Extended Entity-Relationship Model.

Victor M. Markowitz

Proceedings of the Sixth International Conference on Data Engineering, 1990

1989

On the Correctness of Representing Extended Entity-Relationship Structures in the Relational Model.

Victor M. Markowitz, Arie Shoshani

Proceedings of the 1989 ACM SIGMOD International Conference on Management of Data, Portland, Oregon, USA, May 31, 1989

Abbreviated Query Interpretation in Extended Entity-Relationship Oriented Databases.

Victor M. Markowitz, Arie Shoshani

Proceedings of the Entity-Relationship Approach to Database Design and Querying, 1989

Name Assignment Techniques for Relational Schemas Representing Extended Entity-Relationship Schemas.

Victor M. Markowitz, Arie Shoshani

Proceedings of the Entity-Relationship Approach to Database Design and Querying, 1989

1988

Incremental Restructuring of Relational Schemas.

Victor M. Markowitz, Johann A. Makowsky

Proceedings of the Fourth International Conference on Data Engineering, 1988

1987

Entity-Relationship consistency for the relational model of databases.

Victor M. Markowitz

PhD thesis, 1987

Incremental Reorganization of Relational Databases.

Victor M. Markowitz, Johann A. Makowsky

Proceedings of the VLDB'87, 1987

1986

Entity-Relationship Consistency for Relational Schemas.

Johann A. Makowsky, Victor M. Markowitz, Nimrod Rotics

Proceedings of the ICDT'86, 1986

1984

An entity-relationship algebra and its semantic description capabilities.

Victor M. Markowitz, Yoav Raz

J. Syst. Softw., 1984

1983

ERROL: An Entity-Relationship, Role Oriented, Query Language.

Victor M. Markowitz, Yoav Raz

Proceedings of the 3rd Int. Conf. on Entity-Relationship Approach (ER'83), 1983

A Modified Relational Algebra and its Use in an Entity-Relationship Environment.

Victor M. Markowitz, Yoav Raz

Proceedings of the 3rd Int. Conf. on Entity-Relationship Approach (ER'83), 1983