Rafael Najmanovich
Orcid: 0000-0002-6971-7224Affiliations:
- Université de Montréal, QC, Canada
According to our database1,
Rafael Najmanovich
authored at least 24 papers
between 2001 and 2023.
Collaborative distances:
Collaborative distances:
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Bibliography
2023
Surfaces: a software to quantify and visualize interactions within and between proteins and ligands.
Bioinform., October, 2023
The DynaSig-ML Python package: automated learning of biomolecular dynamics-function relationships.
Bioinform., April, 2023
2022
Sequence-sensitive elastic network captures dynamical features necessary for miR-125a maturation.
PLoS Comput. Biol., December, 2022
2021
Modelling conformational state dynamics and its role on infection for SARS-CoV-2 Spike protein variants.
PLoS Comput. Biol., 2021
The NRGTEN Python package: an extensible toolkit for coarse-grained normal mode analysis of proteins, nucleic acids, small molecules and their complexes.
Bioinform., 2021
2017
Remodeling adipose tissue through in silico modulation of fat storage for the prevention of type 2 diabetes.
BMC Syst. Biol., 2017
2016
IsoMIF Finder: online detection of binding site molecular interaction field similarities.
Bioinform., 2016
Proceedings of the Symposium on Theory of Modeling & Simulation, 2016
2015
ENCoM server: exploring protein conformational space and the effect of mutations on protein function and stability.
Nucleic Acids Res., 2015
J. Chem. Inf. Model., 2015
J. Chem. Inf. Model., 2015
Editor's Choice: Achievements and challenges in structural bioinformatics and computational biophysics.
Bioinform., 2015
Bioinform., 2015
2014
A Coarse-Grained Elastic Network Atom Contact Model and Its Use in the Simulation of Protein Dynamics and the Prediction of the Effect of Mutations.
PLoS Comput. Biol., 2014
A curated C. difficile strain 630 metabolic network: prediction of essential targets and inhibitors.
BMC Syst. Biol., 2014
2012
Side-chain rotamer changes upon ligand binding: common, crucial, correlate with entropy and rearrange hydrogen bonding.
Bioinform., 2012
Large-scale analysis of conserved rare codon clusters suggests an involvement in co-translational molecular recognition events.
Bioinform., 2012
2011
J. Chem. Inf. Model., 2011
2008
Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites.
Proceedings of the ECCB'08 Proceedings, 2008
2007
Analysis of binding site similarity, small-molecule similarity and experimental binding profiles in the human cytosolic sulfotransferase family.
Bioinform., 2007
2005
Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons.
Bioinform., 2005
2004
Importance of solvent accessibility and contact surfaces in modeling side-chain conformations in proteins.
J. Comput. Chem., 2004
2001
Bioinform., 2001