Janet M. Thornton
Orcid: 0000-0003-0824-4096Affiliations:
- European Molecular Biology Laboratory, UK
According to our database1,
Janet M. Thornton
authored at least 81 papers
between 1992 and 2022.
Collaborative distances:
Collaborative distances:
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on d-nb.info
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Bibliography
2022
Nucleic Acids Res., 2022
GRaSP-web: a machine learning strategy to predict binding sites based on residue neighborhood graphs.
Nucleic Acids Res., 2022
2020
Nucleic Acids Res., 2020
BMC Bioinform., 2020
2019
PLoS Comput. Biol., 2019
CATH: expanding the horizons of structure-based functional annotations for genome sequences.
Nucleic Acids Res., 2019
VarMap: a web tool for mapping genomic coordinates to protein sequence and structure and retrieving protein structural annotations.
Bioinform., 2019
2018
Mechanism and Catalytic Site Atlas (M-CSA): a database of enzyme reaction mechanisms and active sites.
Nucleic Acids Res., 2018
2016
Bioinform., 2016
2015
Comparisons of Allergenic and Metazoan Parasite Proteins: Allergy the Price of Immunity.
PLoS Comput. Biol., 2015
Nucleic Acids Res., 2015
2014
The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes.
Nucleic Acids Res., 2014
Nucleic Acids Res., 2014
Comparison of the mammalian insulin signalling pathway to invertebrates in the context of FOXO-mediated ageing.
Bioinform., 2014
2013
Amino Acid Changes in Disease-Associated Variants Differ Radically from Variants Observed in the 1000 Genomes Project Dataset.
PLoS Comput. Biol., 2013
New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures.
Nucleic Acids Res., 2013
2012
Exploring the Evolution of Novel Enzyme Functions within Structurally Defined Protein Superfamilies.
PLoS Comput. Biol., 2012
FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies.
Nucleic Acids Res., 2012
Proceedings of the 2012 Joint Working IEEE/IFIP Conference on Software Architecture and European Conference on Software Architecture, 2012
2011
Extending CATH: increasing coverage of the protein structure universe and linking structure with function.
Nucleic Acids Res., 2011
2010
2009
PoreWalker: A Novel Tool for the Identification and Characterization of Channels in Transmembrane Proteins from Their Three-Dimensional Structure.
PLoS Comput. Biol., 2009
Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence Conservation and 3D Structure.
PLoS Comput. Biol., 2009
The CATH classification revisited - architectures reviewed and new ways to characterize structural divergence in superfamilies.
Nucleic Acids Res., 2009
J. Chem. Inf. Model., 2009
WSsas: a web service for the annotation of functional residues through structural homologues.
Bioinform., 2009
PoreLogo: a new tool to analyse, visualize and compare channels in transmembrane proteins.
Bioinform., 2009
ELIXIR - A European Infrastructure for Biological Information: Challenges and Progress.
Proceedings of the 39. Jahrestagung der Gesellschaft für Informatik, Im Focus das Leben, INFORMATIK 2009, Lübeck, Germany, September 28, 2009
2008
The Protein Feature Ontology: a tool for the unification of protein feature annotations.
Bioinform., 2008
Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites.
Proceedings of the ECCB'08 Proceedings, 2008
2007
Evolutionary Models for Formation of Network Motifs and Modularity in the <i>Saccharomyces</i> Transcription Factor Network.
PLoS Comput. Biol., 2007
Construction, Visualisation, and Clustering of Transcription Networks from Microarray Expression Data.
PLoS Comput. Biol., 2007
MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms.
Nucleic Acids Res., 2007
The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution.
Nucleic Acids Res., 2007
Variation of geometrical and physicochemical properties in protein binding pockets and their ligands.
BMC Bioinform., 2007
Analysis of binding site similarity, small-molecule similarity and experimental binding profiles in the human cytosolic sulfotransferase family.
Bioinform., 2007
2005
The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis.
Nucleic Acids Res., 2005
Nucleic Acids Res., 2005
PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids.
Nucleic Acids Res., 2005
Nucleic Acids Res., 2005
Living longer by dieting: analysis of transcriptional response after caloric restriction.
BMC Bioinform., 2005
Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons.
Bioinform., 2005
HTHquery: a method for detecting DNA-binding proteins with a helix-turn-helix structural motif.
Bioinform., 2005
2004
The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data.
Nucleic Acids Res., 2004
Bioinform., 2004
A practical and robust sequence search strategy for structural genomics target selection.
Bioinform., 2004
Microeconomic Principles Explain an Optimal Genome Size in Bacteria.
Proceedings of the 5th Annual Spanish Bioinformatics Conference, Barcelona, Catalonia, 2004
Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004
Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004
Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004
Proceedings of the 26th International Conference on Software Engineering (ICSE 2004), 2004
2003
The CATH database: an extended protein family resource for structural and functional genomics.
Nucleic Acids Res., 2003
Nucleic Acids Res., 2003
An algorithm for constraint-based structural template matching: application to 3D templates with statistical analysis.
Bioinform., 2003
The proteome and the metabolome.
Proceedings of the European Conference on Computational Biology (ECCB 2003), 2003
2002
A Computer System to Perform Structure Comparison using Representations of Protein Structure.
Comput. Chem., 2002
2001
A rapid classification protocol for the CATH Domain Database to support structural genomics.
Nucleic Acids Res., 2001
Amino acid?base interactions: a three-dimensional analysis of protein?DNA interactions at an atomic level.
Nucleic Acids Res., 2001
Evaluation of a knowledge-based potential of mean force for scoring docked protein-ligand complexes.
J. Comput. Chem., 2001
2000
Une technique déclarative pour filtrer des motifs topologiques de protéines.
Proceedings of the Programmation en logique avec contraintes, 2000
1999
Nucleic Acids Res., 1999
BLEEP - potential of mean force describing protein-ligand interactions: I. Generating potential.
J. Comput. Chem., 1999
BLEEP - potential of mean force describing protein-ligand interactions: II. Calculation of binding energies and comparison with experimental data.
J. Comput. Chem., 1999
1998
J. Comput. Aided Mol. Des., 1998
[Invited Lecture] Protein Folds and Functions.
Proceedings of the German Conference on Bioinformatics, 1998
1993
1992
Comput. Appl. Biosci., 1992