Ryuhei Harada
Orcid: 0000-0001-7987-0540
According to our database1,
Ryuhei Harada
authored at least 18 papers
between 2014 and 2023.
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Bibliography
2023
Free-Energy Profiles for Membrane Permeation of Compounds Calculated Using Rare-Event Sampling Methods.
J. Chem. Inf. Model., 2023
Efficient screening of protein-ligand complexes in lipid bilayers using LoCoMock score.
J. Comput. Aided Mol. Des., 2023
2022
Protein Structure Validation Derives a Smart Conformational Search in a Physically Relevant Configurational Subspace.
J. Chem. Inf. Model., 2022
Structural Validation by the <i>G</i>-Factor Properly Regulates Boost Potentials Imposed in Conformational Sampling of Proteins.
J. Chem. Inf. Model., 2022
2020
Efficient Conformational Sampling of Collective Motions of Proteins with Principal Component Analysis-Based Parallel Cascade Selection Molecular Dynamics.
J. Chem. Inf. Model., 2020
2019
Nontargeted Parallel Cascade Selection Molecular Dynamics Based on a Nonredundant Selection Rule for Initial Structures Enhances Conformational Sampling of Proteins.
J. Chem. Inf. Model., 2019
Selection Rules for Outliers in Outlier Flooding Method Regulate Its Conformational Sampling Efficiency.
J. Chem. Inf. Model., 2019
Temperature-pressure shuffling outlier flooding method enhances the conformational sampling of proteins.
J. Comput. Chem., 2019
2018
Temperature-Shuffled Structural Dissimilarity Sampling Based on a Root-Mean-Square Deviation.
J. Chem. Inf. Model., 2018
2017
Self-Avoiding Conformational Sampling Based on Histories of Past Conformational Searches.
J. Chem. Inf. Model., December, 2017
Common folding processes of mini-proteins: Partial formations of secondary structures initiate the immediate protein folding.
J. Comput. Chem., 2017
Temperature-shuffled parallel cascade selection molecular dynamics accelerates the structural transitions of proteins.
J. Comput. Chem., 2017
J. Comput. Chem., 2017
2016
Sparsity-weighted outlier FLOODing (OFLOOD) method: Efficient rare event sampling method using sparsity of distribution.
J. Comput. Chem., 2016
2015
Enhanced conformational sampling method for proteins based on the TaBoo SeArch algorithm: Application to the folding of a mini-protein, chignolin.
J. Comput. Chem., 2015
J. Comput. Chem., 2015
2014
On the induced-fit mechanism of substrate-enzyme binding structures of nylon-oligomer hydrolase.
J. Comput. Chem., 2014