Takatsugu Hirokawa

According to our database, Takatsugu Hirokawa authored at least 13 papers between 1998 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

AAp-MSMD: Amino Acid Preference Mapping on Protein-Protein Interaction Surfaces Using Mixed-Solvent Molecular Dynamics.

Genki Kudo, Keisuke Yanagisawa, Ryunosuke Yoshino, Takatsugu Hirokawa

J. Chem. Inf. Model., December, 2023

Pocket to concavity: a tool for the refinement of protein-ligand binding site shape from alpha spheres.

Genki Kudo, Takumi Hirao, Ryunosuke Yoshino, Yasuteru Shigeta, Takatsugu Hirokawa

Bioinform., April, 2023

2021

MDContactCom: a tool to identify differences of protein molecular dynamics from two MD simulation trajectories in terms of interresidue contacts.

Chie Motono, Shunsuke Yanagida, Miwa Sato, Takatsugu Hirokawa

Bioinform., 2021

2016

The Effect of Conformational Flexibility on Binding Free Energy Estimation between Kinases and Their Inhibitors.

Mitsugu Araki, Narutoshi Kamiya, Miwa Sato, Masahiko Nakatsui, Takatsugu Hirokawa, Yasushi Okuno

J. Chem. Inf. Model., 2016

2015

Privacy-preserving search for chemical compound databases.

Kana Shimizu, Koji Nuida, Hiromi Arai, Shigeo Mitsunari, Nuttapong Attrapadung, Michiaki Hamada, Koji Tsuda, Takatsugu Hirokawa, Jun Sakuma, Goichiro Hanaoka, Kiyoshi Asai

BMC Bioinform., December, 2015

2014

Tertiary Structure Prediction of RNA-RNA Complexes Using a Secondary Structure and Fragment-Based Method.

Satoshi Yamasaki, Takatsugu Hirokawa, Kiyoshi Asai, Kazuhiko Fukui

J. Chem. Inf. Model., 2014

Extended Template-Based Modeling and Evaluation Method Using Consensus of Binding Mode of GPCRs for Virtual Screening.

Miwa Sato, Takatsugu Hirokawa

J. Chem. Inf. Model., 2014

2011

Discovery of Chemical Compound Groups with Common Structures by a Network Analysis Approach (Affinity Prediction Method).

Shigeru Saito, Takatsugu Hirokawa, Katsuhisa Horimoto

J. Chem. Inf. Model., 2011

Correlation Analyses on Binding Affinity of Sialic Acid Analogues and Anti-Influenza Drugs with Human Neuraminidase Using ab Initio MO Calculations on Their Complex Structures - LERE-QSAR Analysis (IV).

Seiji Hitaoka, Hiroshi Matoba, Masataka Harada, Tatsusada Yoshida, Daisuke Tsuji, Takatsugu Hirokawa, Kohji Itoh, Hiroshi Chuman

J. Chem. Inf. Model., 2011

2010

Analysis of protein-protein docking decoys using interaction fingerprints: application to the reconstruction of CaM-ligand complexes.

Nobuyuki Uchikoga, Takatsugu Hirokawa

BMC Bioinform., 2010

2005

GRIFFIN: a system for predicting GPCR-G-protein coupling selectivity using a support vector machine and a hidden Markov model.

Yukimitsu Yabuki, Takahiko Muramatsu, Takatsugu Hirokawa, Hidehito Mukai, Makiko Suwa

Nucleic Acids Res., 2005

2002

Amphiphilicity index of polar amino acids as an aid in the characterization of amino acid preference at membrane-water interfaces.

Shigeki Mitaku, Takatsugu Hirokawa, Toshiyuki Tsuji

Bioinform., 2002

1998

SOSUI: classification and secondary structure prediction system for membrane proteins.

Takatsugu Hirokawa, S. Boon-Chieng, Shigeki Mitaku

Bioinform., 1998